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Persistent homology is a mathematical tool used for studying the shape of data by extracting its topological features. It has gained popularity in network science due to its applicability in various network mining problems, including…

Algebraic Topology · Mathematics 2023-06-21 Mehmet Emin Aktas , Thu Nguyen , Rakin Riza , Muhammad Ifte Islam , Esra Akbas

Techniques from computational topology, in particular persistent homology, are becoming increasingly relevant for data analysis. Their stable metrics permit the use of many distance-based data analysis methods, such as multidimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

The application of network techniques to the analysis of neural data has greatly improved our ability to quantify and describe these rich interacting systems. Among many important contributions, networks have proven useful in identifying…

Quantitative Methods · Quantitative Biology 2018-06-14 Ann E. Sizemore , Jennifer Phillips-Cremins , Robert Ghrist , Danielle S. Bassett

Classical Hamiltonian mechanics, characterized by a single conserved Hamiltonian (energy) and symplectic geometry, `hides' other invariants into symmetries of the Hamiltonian or into the kernel of the Poisson tensor. Nambu mechanics aims to…

Differential Geometry · Mathematics 2025-02-14 Nathan Duignan , Naoki Sato

Transport and mixing in dynamical systems are important properties for many physical, chemical, biological, and engineering processes. The detection of transport barriers for dynamics with general time dependence is a difficult, but…

Dynamical Systems · Mathematics 2017-08-02 Gary Froyland , Eric Kwok

Persistent homology is a natural tool for probing the topological characteristics of weighted graphs, essentially focusing on their $0$-dimensional homology. While this area has been substantially studied, we present a new approach to…

Algebraic Topology · Mathematics 2023-10-03 Omer Bobrowski , Primoz Skraba

Given a sample from a probability measure with support on a submanifold in Euclidean space one can construct a neighborhood graph which can be seen as an approximation of the submanifold. The graph Laplacian of such a graph is used in…

Statistics Theory · Mathematics 2007-06-27 Matthias Hein , Jean-Yves Audibert , Ulrike von Luxburg

In real-world systems, the relationships and connections between components are highly complex. Real systems are often described as networks, where nodes represent objects in the system and edges represent relationships or connections…

Algebraic Topology · Mathematics 2024-06-24 Shen Zhang

A fundamental challenge in multiparameter persistent homology is the absence of a complete and discrete invariant. To address this issue, we propose an enhanced framework that realizes a holistic understanding of a fully commutative…

Algebraic Topology · Mathematics 2023-11-14 Yasuaki Hiraoka , Ken Nakashima , Ippei Obayashi , Chenguang Xu

Topological Machine Learning (TML) is an emerging field that leverages techniques from algebraic topology to analyze complex data structures in ways that traditional machine learning methods may not capture. This tutorial provides a…

Machine Learning · Computer Science 2024-09-05 Baris Coskunuzer , Cüneyt Gürcan Akçora

This expository article presents a self-contained introduction to simplicial homology for finite simplicial complexes, emphasizing concrete computation and geometric intuition. Beginning with orientations of simplices and the construction…

Algebraic Topology · Mathematics 2025-11-06 Sanjay Mishra

We consider a general family of regularized Navier-Stokes and Magnetohydrodynamics (MHD) models on n-dimensional smooth compact Riemannian manifolds with or without boundary, with n greater than or equal to 2. This family captures most of…

Analysis of PDEs · Mathematics 2015-05-13 Michael Holst , Evelyn Lunasin , Gantumur Tsogtgerel

This thesis generalizes the differential operators on standard oriented graphs and oriented hypergraphs introduced in 10.1137/15M1022793 and arXiv:2007.00325. The extended concepts of gradients, adjoints and $p$-Laplacians for vertices and…

Combinatorics · Mathematics 2023-04-14 Ariane Fazeny

In this paper, we consider the Sub-Laplacian L which consists of sum of squares of smooth vector fields that satisfy Hormander's finite rank condition. We study the Dirichlet problem for this operator on domains that satisfy certain…

Analysis of PDEs · Mathematics 2008-03-07 Luca Capogna , Nicola Garofalo , Duy-Minh Nhieu

Observing critical phases in lattice models is challenging due to the need to analyze the finite time or size scaling of observables. We study how the computational topology technique of persistent homology can be used to characterize…

Disordered Systems and Neural Networks · Physics 2022-09-05 Yu He , Shiqi Xia , Dimitris G. Angelakis , Daohong Song , Zhigang Chen , Daniel Leykam

Appropriately representing elements in a database so that queries may be accurately matched is a central task in information retrieval; recently, this has been achieved by embedding the graphical structure of the database into a manifold in…

Machine Learning · Statistics 2023-07-10 Yueqi Cao , Athanasios Vlontzos , Luca Schmidtke , Bernhard Kainz , Anthea Monod

Multiparameter persistent homology has emerged as a powerful generalization of topological data analysis, capable of encoding multivariate filtrations. However, the algebraic complexity of multiparameter persistence modules, marked by wild…

Algebraic Topology · Mathematics 2026-04-14 Mauricio Angel

We introduce a new notion of persistence modules endowed with operators. It encapsulates the additional structure on Floer-type persistence modules coming from the intersection product with classes in the ambient (quantum) homology, along…

Symplectic Geometry · Mathematics 2017-03-07 Leonid Polterovich , Egor Shelukhin , Vukašin Stojisavljević

The persistent homology of a stationary point process on ${\bf R}^N$ is studied in this paper. As a generalization of continuum percolation theory, we study higher dimensional topological features of the point process such as loops,…

Probability · Mathematics 2016-12-28 Trinh Khanh Duy , Yasuaki Hiraoka , Tomoyuki Shirai

Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of…

Machine Learning · Computer Science 2019-02-27 Tatsuya Shiraishi , Tam Le , Hisashi Kashima , Makoto Yamada
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