Related papers: On the Coding Capacity of Reverse-Complement and P…
Motivated by applications in in-vivo DNA storage, we study codes for correcting duplications. A reverse-complement duplication of length $k$ is the insertion of the reversed and complemented copy of a substring of length $k$ adjacent to its…
In this work, we propose constructions that correct duplications of multiple consecutive symbols. These errors are known as tandem duplications, where a sequence of symbols is repeated; respectively as palindromic duplications, where a…
Motivated by DNA storage in living organisms, and by known biological mutation processes, we study the reverse-complement string-duplication system. We fully classify the conditions under which the system has full expressiveness, for all…
In this work, we derive upper bounds on the cardinality of tandem duplication and palindromic deletion correcting codes by deriving the generalized sphere packing bound for these error types. We first prove that an upper bound for tandem…
We consider the problem of constructing a code capable of correcting a single long tandem duplication error of variable length. As the main contribution of this paper, we present a $q$-ary efficiently encodable code of length $n+1$ and…
We consider the compound capacity of polar codes under successive cancellation decoding for a collection of binary-input memoryless output-symmetric channels. By deriving a sequence of upper and lower bounds, we show that in general the…
We study codes that can correct backtracking errors during nanopore sequencing. In this channel, a sequence of length $n$ over an alphabet of size $q$ is being read by a sliding window of length $\ell$, where from each window we obtain only…
A complete classification of the perfect binary one-error-correcting codes of length 15 as well as their extensions of length 16 is presented. There are 5983 such inequivalent perfect codes and 2165 extended perfect codes. Efficient…
The doubly shortened perfect codes of length 13 are classified utilizing the classification of perfect codes in [P.R.J. \"Osterg{\aa}rd and O. Pottonen, The perfect binary one-error-correcting codes of length 15: Part I - Classification,…
A binary 1-error-correcting code can always be embedded in a 1-perfect code of some larger length
We define a variable-length code having the property that no (non-empty) prefix of each its codeword is a suffix of any other one, and vice versa. This kind of code can be seen as an extension of two well-known codes in literature, called…
We examine regular and irregular repeat-accumulate (RA) codes with repetition degrees which are all even. For these codes and with a particular choice of an interleaver, we give an upper bound on the decoding error probability of a…
We present an asymptotic limit between correctable and uncor-rectable errors on the Reed-Muller codes of any order. This limit is theoretical and does not depend of any decoding algorithm.
A (tandem) duplication of length $ k $ is an insertion of an exact copy of a substring of length $ k $ next to its original position. This and related types of impairments are of relevance in modeling communication in the presence of…
In this paper we consider the problem of encoding data into \textit{repeat-free} sequences in which sequences are imposed to contain any $k$-tuple at most once (for predefined $k$). First, the capacity of the repeat-free constraint are…
In this work we investigate codes in $\mathbb{Z}_{2^m}^n$ that can correct errors that occur in just one coordinate of the codeword, with a magnitude of up to a given parameter $t$. We will show upper bounds on these cross codes, derive…
We introduce alphabet-permutation (AP) codes, a new family of error-correcting codes defined by iteratively applying random coordinate-wise permutations to a fixed initial word. A special case recovers random additive codes and random…
One peculiarity with deletion-correcting codes is that perfect $t$-deletion-correcting codes of the same length over the same alphabet can have different numbers of codewords, because the balls of radius $t$ with respect to the…
We construct a family of linear maximally recoverable codes with locality $r$ and dimension $r+1.$ For codes of length $n$ with $r\approx n^\alpha, 0\le\alpha\le 1$ the code alphabet is of the order $n^{1+3\alpha},$ which improves upon the…
Consider a binary word being transmitted through a communication channel that introduces deletable errors where each bit of the word is either retained, flipped, erased or deleted. The simplest code for correcting \emph{all} possible…