English
Related papers

Related papers: Parallelizing Optimal Multiple Sequence Alignment …

200 papers

Heterogeneous many-cores are now an integral part of modern computing systems ranging from embedding systems to supercomputers. While heterogeneous many-core design offers the potential for energy-efficient high-performance, such potential…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-11 Jianbin Fang , Chun Huang , Tao Tang , Zheng Wang

There is increasing interest in using multicore processors to accelerate stream processing. For example, indexing sliding window content to enhance the performance of streaming queries is greatly improved by utilizing the computational…

Databases · Computer Science 2019-03-04 Amirhesam Shahvarani , Hans-Arno Jacobsen

We study the problem of scheduling a general computational DAG on multiple processors in a 2-level memory hierarchy. This setting is a natural generalization of several prominent models in the literature, and it simultaneously captures…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-24 Pál András Papp , Toni Böhnlein , A. N. Yzelman

Shared resource interference is observed by applications as dynamic performance asymmetry. Prior art has developed approaches to reduce the impact of performance asymmetry mainly at the operating system and architectural levels. In this…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-24 Jing Chen , Pirah Noor Soomro , Mustafa Abduljabbar , Madhavan Manivannan , Miquel Pericas

Data processing systems offer an ever increasing degree of parallelism on the levels of cores, CPUs, and processing nodes. Query optimization must exploit high degrees of parallelism in order not to gradually become the bottleneck of query…

Databases · Computer Science 2015-11-06 Immanuel Trummer , Christoph Koch

As quantum computers continue to improve and support larger, more complex computations, smart control hardware and compilers are needed to efficiently leverage the capabilities of these systems. This paper introduces a novel approach to…

Quantum Physics · Physics 2025-11-19 Folkert de Ronde , Alexander Knapen , Stephan Wong , Sebastian Feld

This article introduces a highly parallel algorithm for molecular dynamics simulations with short-range forces on single node multi- and many-core systems. The algorithm is designed to achieve high parallel speedups for strongly…

Computational Physics · Physics 2013-11-20 R. Meyer

Parallel computing is a standard approach to achieving high-performance computing (HPC). Three commonly used methods to implement parallel computing include: 1) applying multithreading technology on single-core or multi-core CPUs; 2)…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-09-18 Xinyao Yi

To train modern large DNN models, pipeline parallelism has recently emerged, which distributes the model across GPUs and enables different devices to process different microbatches in pipeline. Earlier pipeline designs allow multiple…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-08-23 Ziyue Luo , Xiaodong Yi , Guoping Long , Shiqing Fan , Chuan Wu , Jun Yang , Wei Lin

Solving multiscale diffusion problems is often computationally expensive due to the spatial and temporal discretization challenges arising from high-contrast coefficients. To address this issue, a partially explicit temporal splitting…

Numerical Analysis · Mathematics 2026-02-26 Yating Wang , Zhengya Yang , Wing Tat Leung

A parallel computer system is a collection of processing elements that communicate and cooperate to solve large computational problems efficiently. To achieve this, at first the large computational problem is partitioned into several tasks…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-09-09 Ardhendu Mandal , Subhas Chandra Pal

Self-adjusting computation is an approach for automatically producing dynamic algorithms from static ones. The approach works by tracking control and data dependencies, and propagating changes through the dependencies when making an update.…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-17 Daniel Anderson , Guy E. Blelloch , Anubhav Baweja , Umut A. Acar

The past few years have witnessed growth in the computational requirements for training deep convolutional neural networks. Current approaches parallelize training onto multiple devices by applying a single parallelization strategy (e.g.,…

Machine Learning · Computer Science 2018-06-12 Zhihao Jia , Sina Lin , Charles R. Qi , Alex Aiken

In this paper, we consider the problem of scheduling an application on a parallel computational platform. The application is a particular task graph, either a linear chain of tasks, or a set of independent tasks. The platform is made of…

Data Structures and Algorithms · Computer Science 2012-10-18 Guillaume Aupy , Anne Benoit

The links between optimal control of dynamical systems and neural networks have proved beneficial both from a theoretical and from a practical point of view. Several researchers have exploited these links to investigate the stability of…

Optimization and Control · Mathematics 2019-02-08 Panos Parpas , Corey Muir

Training a deep neural network (DNN) requires substantial computational and memory requirements. It is common to use multiple devices to train a DNN to reduce the overall training time. There are several choices to parallelize each layer in…

Machine Learning · Computer Science 2024-07-08 Venmugil Elango

We propose a first-order method for convex optimization, where instead of being restricted to the gradient from a single parameter, gradients from multiple parameters can be used during each step of gradient descent. This setup is…

Machine Learning · Computer Science 2023-02-08 Yash Chandak , Shiv Shankar , Venkata Gandikota , Philip S. Thomas , Arya Mazumdar

Stochastic algorithms are efficient approaches to solving machine learning and optimization problems. In this paper, we propose a general framework called Splash for parallelizing stochastic algorithms on multi-node distributed systems.…

Machine Learning · Computer Science 2015-09-24 Yuchen Zhang , Michael I. Jordan

Because most optimisations to achieve higher computational performance eventually are limited, parallelism that scales is required. Parallelised hardware alone is not sufficient, but software that matches the architecture is required to…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-11 Oskar Schirmer

Regions of nested loops are a common feature of High Performance Computing (HPC) codes. In shared memory programming models, such as OpenMP, these structure are the most common source of parallelism. Parallelising these structures requires…

Programming Languages · Computer Science 2012-05-14 Adrian Jackson , Orestis Agathokleous