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Complex network theory has been used to study complex systems. However, many real-life systems involve multiple kinds of objects . They can't be described by simple graphs. In order to provide complete information of these systems, we…

Physics and Society · Physics 2015-11-10 Jin-Li Guo , Xin-Yun Zhu

Analyzing and understanding the structure of complex relational data is important in many applications including analysis of the connectivity in the human brain. Such networks can have prominent patterns on different scales, calling for a…

Machine Learning · Statistics 2013-11-22 Mikkel N. Schmidt , Tue Herlau , Morten Mørup

Higher order interactions are increasingly recognised as a fundamental aspect of complex systems ranging from the brain to social contact networks. Hypergraph as well as simplicial complexes capture the higher-order interactions of complex…

Physics and Society · Physics 2021-09-23 Hanlin Sun , Ginestra Bianconi

Metabolic networks are probably among the most challenging and important biological networks. Their study provides insight into how biological pathways work and how robust a specific organism is against an environment or therapy. Here we…

Physics and Society · Physics 2023-10-06 Pietro Traversa , Guilherme Ferraz de Arruda , Alexei Vazquez , Yamir Moreno

In a previous work a procedure was decribed for dividing the $3 \times N$-dimensional conformational space of a molecular system into a number of discrete cells, this partition allowed the building of a combinatorial structure from data…

Computational Physics · Physics 2011-05-17 Jacques Gabarro-Arpa

Hypergraph data, which capture multi-way interactions among entities, are increasingly prevalent in the big data era. Generating new hyperlinks from an observed, usually high-dimensional hypergraph is an important yet challenging task with…

Methodology · Statistics 2026-05-14 Shihao Wu , Junyi Yang , Gongjun Xu , Ji Zhu

We give a constructive method for realizing an arbitrary directed graph (with no one-cycles) as a heteroclinic or an excitable dynamic network in the phase space of a system of coupled cells of two types. In each case, the system is…

Adaptation and Self-Organizing Systems · Physics 2015-12-17 Peter Ashwin , Claire Postlethwaite

Directed and heterogeneous hypergraphs capture directional higher-order interactions with intrinsically asymmetric functional dependencies among nodes. As a result, damage to certain nodes can suppress entire hyperedges, whereas failure of…

Disordered Systems and Neural Networks · Physics 2026-01-29 Yunxue Sun , Xueming Liu , Ginestra Bianconi

Given any complex directed network, a set of acyclic subgraphs - the hierarchical backbone of the network - can be extracted that will provide valuable information about its hierarchical structure. The current paper presents how the…

Statistical Mechanics · Physics 2007-05-23 Luciano da Fontoura Costa

Hypergraphs, which use hyperedges to capture groupwise interactions among different entities, have gained increasing attention recently for their versatility in effectively modeling real-world networks. In this paper, we study the problem…

Data Structures and Algorithms · Computer Science 2025-04-04 Haozhe Yin , Kai Wang , Wenjie Zhang , Ying Zhang , Ruijia Wu , Xuemin Lin

Deep neural network architectures often consist of repetitive structural elements. We introduce an approach that reveals these patterns and can be broadly applied to the study of deep learning. Similarly to how a power strip helps untangle…

Statistical Mechanics · Physics 2025-07-03 Donghee Lee , Hye-Sung Lee , Jaeok Yi

The use of graph centrality measures applied to biological networks, such as protein interaction networks, underpins much research into identifying key players within biological processes. This approach however is restricted to dyadic…

Quantitative Methods · Quantitative Biology 2024-10-24 Sarah Lawson , Diane Donovan , James Lefevre

Hypergraph is a data structure that enables us to model higher-order associations among data entities. Conventional graph-structured data can represent pairwise relationships only, whereas hypergraph enables us to associate any number of…

Machine Learning · Computer Science 2024-12-10 Md. Tanvir Alam , Chowdhury Farhan Ahmed , Carson K. Leung

Technology convergence integrates distinct domains to create novel combinations, driving radical innovation that reshapes markets and industries. However, most approaches rely on pairwise networks that cannot capture multi-technology…

Physics and Society · Physics 2026-02-27 Yiwei Huang , Shuqi Xu , Shimin Cai , Linyuan Lü

Superpixels serve as a powerful preprocessing tool in numerous computer vision tasks. By using superpixel representation, the number of image primitives can be largely reduced by orders of magnitudes. With the rise of deep learning in…

Computer Vision and Pattern Recognition · Computer Science 2021-11-19 Hankui Peng , Angelica I. Aviles-Rivero , Carola-Bibiane Schönlieb

This review presents various image segmentation methods using complex networks. Image segmentation is one of the important steps in image analysis as it helps analyze and understand complex images. At first, it has been tried to classify…

Computer Vision and Pattern Recognition · Computer Science 2024-01-08 Amin Rezaei , Fatemeh Asadi

The humanities, like many other areas of society, are currently undergoing major changes in the wake of digital transformation. However, in order to make collection of digitised material in this area easily accessible, we often still lack…

Information Retrieval · Computer Science 2021-03-23 Vuong M. Ngo , Sven Helmer , Nhien-An Le-Khac , M-Tahar Kechadi

Convolutional neural networks excel in histopathological image classification, yet their pixel-level focus hampers explainability. Conversely, emerging graph convolutional networks spotlight cell-level features and medical implications.…

Computer Vision and Pattern Recognition · Computer Science 2023-08-25 Ziqi Yang , Zhongyu Li , Chen Liu , Xiangde Luo , Xingguang Wang , Dou Xu , Chaoqun Li , Xiaoying Qin , Meng Yang , Long Jin

While there has been tremendous activity in the area of statistical network inference on graphs, hypergraphs have not enjoyed the same attention, on account of their relative complexity and the lack of tractable statistical models. We…

Methodology · Statistics 2025-04-15 Ga-Ming Angus Chan , Zachary Lubberts

The high dimensionality of hyperspectral imaging forces unique challenges in scope, size and processing requirements. Motivated by the potential for an in-the-field cell sorting detector, we examine a $\textit{Synechocystis sp.}$ PCC 6803…

Neural and Evolutionary Computing · Computer Science 2017-10-30 William M. Severa , Jerilyn A. Timlin , Suraj Kholwadwala , Conrad D. James , James B. Aimone