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We describe a data structure, a rectangular complex, that can be used to represent hyperconvex metric spaces that have the same topology (although not necessarily the same distance function) as subsets of the plane. We show how to use this…
In this paper we merge recent developments on exact algorithms for finding an ordering of vertices of a given graph that minimizes bandwidth (the BANDWIDTH problem) and for finding an embedding of a given graph into a line that minimizes…
We consider labeling nodes of a directed graph for reachability queries. A reachability labeling scheme for such a graph assigns a binary string, called a label, to each node. Then, given the labels of nodes $u$ and $v$ and no other…
It is well known that ordinary persistence on graphs can be computed more efficiently than the general persistence. Recently, it has been shown that zigzag persistence on graphs also exhibits similar behavior. Motivated by these results, we…
Let $P$ be a set of $n$ colored points. We develop efficient data structures that store $P$ and can answer chromatic $k$-nearest neighbor ($k$-NN) queries. Such a query consists of a query point $q$ and a number $k$, and asks for the color…
We study the density estimation problem defined as follows: given $k$ distributions $p_1, \ldots, p_k$ over a discrete domain $[n]$, as well as a collection of samples chosen from a ``query'' distribution $q$ over $[n]$, output $p_i$ that…
In the recent research of data mining, frequent structures in a sequence of graphs have been studied intensively, and one of the main concern is changing structures along a sequence of graphs that can capture dynamic properties of data. On…
We consider the problem of computing the diameter of a unicycle graph (i.e., a graph with a unique cycle). We present an O(n) time algorithm for the problem, where n is the number of vertices of the graph. This improves the previous best…
The Planar Graph Metric Compression Problem is to compactly encode the distances among $k$ nodes in a planar graph of size $n$. Two na\"ive solutions are to store the graph using $O(n)$ bits, or to explicitly store the distance matrix with…
We present new and improved data structures that answer exact node-to-node distance queries in planar graphs. Such data structures are also known as distance oracles. For any directed planar graph on n nodes with non-negative lengths we…
Treewidth is a measure of how tree-like a graph is. It has many important algorithmic applications because many NP-hard problems on general graphs become tractable when restricted to graphs of bounded treewidth. Algorithms for problems on…
The rank problem in succinct data structures asks to preprocess an array A[1..n] of bits into a data structure using as close to n bits as possible, and answer queries of the form rank(k) = Sum_{i=1}^k A[i]. The problem has been intensely…
We present an efficient dynamic data structure that supports geodesic nearest neighbor queries for a set of point sites $S$ in a static simple polygon $P$. Our data structure allows us to insert a new site in $S$, delete a site from $S$,…
We describe a new sampling-based method to determine cuts in an undirected graph. For a graph (V, E), its cycle space is the family of all subsets of E that have even degree at each vertex. We prove that with high probability, sampling the…
Given a weighted graph $G$ and an error parameter $\epsilon > 0$, the {\em graph sparsification} problem requires sampling edges in $G$ and giving the sampled edges appropriate weights to obtain a sparse graph $G_{\epsilon}$ (containing…
The implicit representation conjecture concerns hereditary families of graphs. Given a graph in such a family, we want to assign some string of bits to each vertex in such a way that we can recover the information about whether 2 vertices…
The Nearest Neighbor Search (NNS) problem asks to design a data structure that preprocesses an $n$-point dataset $X$ lying in a metric space $\mathcal{M}$, so that given a query point $q \in \mathcal{M}$, one can quickly return a point of…
Similarity search approaches based on graph walks have recently attained outstanding speed-accuracy trade-offs, taking aside the memory requirements. In this paper, we revisit these approaches by considering, additionally, the memory…
Recently, we presented a new Two-Bar Charts Packing Problem (2-BCPP), in which it is necessary to pack two-bar charts (2-BCs) in a unit-height strip of minimum length. The problem is a generalization of the Bin Packing Problem and 2-D…
Quasi-median graphs are a tool commonly used by evolutionary biologists to visualise the evolution of molecular sequences. As with any graph, a quasi-median graph can contain cut vertices, that is, vertices whose removal disconnect the…