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The advances in understanding complex networks have generated increasing interest in dynamical processes occurring on them. Pattern formation in activator-inhibitor systems has been studied in networks, revealing differences from the…

Adaptation and Self-Organizing Systems · Physics 2015-06-09 Nikos E. Kouvaris , Shigefumi Hata , Albert Díaz-Guilera

Stronger selection implies faster evolution---that is, the greater the force, the faster the change. This apparently self-evident proposition, however, is derived under the assumption that genetic variation within a population is primarily…

Populations and Evolution · Quantitative Biology 2017-08-18 Masahiko Ueda , Nobuto Takeuchi , Kunihiko Kaneko

The relationship between network topology and system dynamics has significant implications for unifying our understanding of the interplay among metabolic, gene-regulatory, and ecosystem network architecures. Here we analyze the stability…

Populations and Evolution · Quantitative Biology 2015-06-17 Cameron Smith , Raymond S. Puzio , Aviv Bergman

In the last decades, complex networks theory significantly influenced other disciplines on the modeling of both static and dynamic aspects of systems observed in nature. This work aims to investigate the effects of networks' topological…

Neural and Evolutionary Computing · Computer Science 2012-02-09 Matteo De Felice , Sandro Meloni , Stefano Panzieri

Deep neural networks exhibit a simplicity bias, a well-documented tendency to favor simple functions over complex ones. In this work, we cast new light on this phenomenon through the lens of the Minimum Description Length principle,…

A recent line of work has established intriguing connections between the generalization/compression properties of a deep neural network (DNN) model and the so-called layer weights' stable ranks. Intuitively, the latter are indicators of the…

Machine Learning · Computer Science 2021-10-07 Bogdan Georgiev , Lukas Franken , Mayukh Mukherjee , Georgios Arvanitidis

Understanding the role of network structure in the evolution of cooperation is a key research goal at the intersection between physics and biology. Recent studies have particularly focused on multiplex networks given that multiple social…

Physics and Society · Physics 2020-07-27 Hirofumi Takesue

This thesis is a compendium of research which brings together ideas from the fields of Complex Networks and Computational Neuroscience to address two questions regarding neural systems: 1) How the activity of neurons, via synaptic changes,…

Neurons and Cognition · Quantitative Biology 2013-02-19 Samuel Johnson

Empirical and theoretical works show that the input weights of two-layer neural networks, when initialized with small values, converge towards isolated orientations. This phenomenon, referred to as condensation, indicates that the gradient…

Machine Learning · Computer Science 2024-02-28 Zheng-An Chen , Tao Luo

In this paper, we consider two stubborn agents who compete for `influence' over a strongly connected group of agents. This framework represents real-world contests, such as competition among firms, two-party elections, and sports rivalries,…

Systems and Control · Electrical Eng. & Systems 2025-04-07 Aashi Shrinate , Twinkle Tripathy

The dynamical mechanisms that can stabilize the coexistence of species (or strategies) are of substantial interest for the maintenance of biodiversity and in sociobehavioural dynamics. We investigate the mean extinction time in the…

Populations and Evolution · Quantitative Biology 2010-03-16 Markus Schütt , Jens Christian Claussen

Systems composed of distinct complex networks are present in many real-world environments, from society to ecological systems. In the present paper, we propose a network model obtained as a consequence of interactions between two species…

Biological Physics · Physics 2007-08-08 Luis Enrique Correa da Rocha , Luciano da Fontoura Costa

The coexistence of multiple types of interactions within social, technological and biological networks has moved the focus of the physics of complex systems towards a multiplex description of the interactions between their constituents.…

Physics and Society · Physics 2015-11-09 Jesús Gómez-Gardeñes , Manlio De Domenico , Gerardo Gutiérrez , Alex Arenas , Sergio Gómez

Numerous concise models such as preferential attachment have been put forward to reveal the evolution mechanisms of real-world networks, which show that real-world networks are usually jointly driven by a hybrid mechanism of multiplex…

Physics and Society · Physics 2016-01-12 Qian-Ming Zhang , Xiao-Ke Xu , Yu-Xiao Zhu , Tao Zhou

Evolutionary graph theory studies the evolutionary dynamics in a population structure given as a connected graph. Each node of the graph represents an individual of the population, and edges determine how offspring are placed. We consider…

Neural and Evolutionary Computing · Computer Science 2017-06-22 Krishnendu Chatterjee , Rasmus Ibsen-Jensen , Martin A. Nowak

Large sets of genotypes give rise to the same phenotype because phenotypic expression is highly redundant. Accordingly, a population can accept mutations without altering its phenotype, as long as thegenotype mutates into another one on the…

Populations and Evolution · Quantitative Biology 2015-02-18 Susanna Manrubia , José A. Cuesta

Discrete dynamic models are a powerful tool for the understanding and modeling of large biological networks. Although a lot of progress has been made in developing analysis tools for these models, there is still a need to find approaches…

Molecular Networks · Quantitative Biology 2013-06-14 Jorge G. T. Zañudo , Réka Albert

The effects of the finite size of the network on the evolutionary dynamics of a Boolean network are analyzed. In the model considered, Boolean networks evolve via a competition between nodes that punishes those in the majority. It is found…

Statistical Mechanics · Physics 2016-09-08 Min Liu , Kevin E. Bassler

Boolean networks with canalizing functions are used to model gene regulatory networks. In order to learn how such networks may behave under evolutionary forces, we simulate the evolution of a single Boolean network by means of an adaptive…

Populations and Evolution · Quantitative Biology 2011-11-09 Agnes Szejka , Barbara Drossel

Convolutional neural networks (CNNs) have achieved remarkable performance in various fields, particularly in the domain of computer vision. However, why this architecture works well remains to be a mystery. In this work we move a small step…

Machine Learning · Computer Science 2019-05-27 Bing Yu , Junzhao Zhang , Zhanxing Zhu