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Despite significant advances in the field of deep learning in applications to various fields, explaining the inner processes of deep learning models remains an important and open question. The purpose of this article is to describe and…

Machine Learning · Computer Science 2022-04-20 German Magai , Anton Ayzenberg

When biological foundation models such as scGPT and Geneformer process single-cell gene expression, what geometric and topological structure forms in their internal representations? Is that structure biologically meaningful or a training…

Quantitative Methods · Quantitative Biology 2026-03-09 Ihor Kendiukhov

Ovarian cancer remains one of the most lethal gynecological malignancies, largely due to late diagnosis and extensive heterogeneity across subtypes. Current diagnostic methods are limited in their ability to reveal underlying genomic…

Image and Video Processing · Electrical Eng. & Systems 2025-11-06 Gabriela Fernandes

From a single image, visual cues can help deduce intrinsic and extrinsic camera parameters like the focal length and the gravity direction. This single-image calibration can benefit various downstream applications like image editing and 3D…

Computer Vision and Pattern Recognition · Computer Science 2024-10-18 Alexander Veicht , Paul-Edouard Sarlin , Philipp Lindenberger , Marc Pollefeys

Matching is a popular approach in causal inference to estimate treatment effects by pairing treated and control units that are most similar in terms of their covariate information. However, classic matching methods completely ignore the…

Machine Learning · Computer Science 2025-05-07 Melanie F. Pradier , Javier González

General object composition (GOC) aims to seamlessly integrate a target object into a background scene with desired geometric properties, while simultaneously preserving its fine-grained appearance details. Recent approaches derive semantic…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Jianman Lin , Haojie Li , Chunmei Qing , Zhijing Yang , Liang Lin , Tianshui Chen

Camera-captured document images often suffer from geometric distortions caused by paper deformation, perspective distortion, and lens aberrations, significantly reducing OCR accuracy. This study develops an efficient automated method for…

Computer Vision and Pattern Recognition · Computer Science 2025-11-20 Valery Istomin , Oleg Pereziabov , Ilya Afanasyev

Segmentation networks are not explicitly imposed to learn global invariants of an image, such as the shape of an object and the geometry between multiple objects, when they are trained with a standard loss function. On the other hand,…

Image and Video Processing · Electrical Eng. & Systems 2026-01-21 Seher Ozcelik , Sinan Unver , Ilke Ali Gurses , Rustu Turkay , Cigdem Gunduz-Demir

In most computer vision and image analysis problems, it is necessary to define a similarity measure between two or more different objects or images. Template matching is a classic and fundamental method used to score similarities between…

Computer Vision and Pattern Recognition · Computer Science 2016-10-25 Nazanin Sadat Hashemi , Roya Babaie Aghdam , Atieh Sadat Bayat Ghiasi , Parastoo Fatemi

Establishing dense correspondence across 3D shapes is crucial for fundamental downstream tasks, including texture transfer, shape interpolation, and robotic manipulation. However, learning these mappings without manual supervision remains a…

Computer Vision and Pattern Recognition · Computer Science 2026-03-10 Qinfeng Xiao , Guofeng Mei , Qilong Liu , Chenyuan Yi , Fabio Poiesi , Jian Zhang , Bo Yang , Yick Kit-lun

Recognizing precise geometrical configurations of groups of objects is a key capability of human spatial cognition, yet little studied in the deep learning literature so far. In particular, a fundamental problem is how a machine can learn…

Machine Learning · Computer Science 2020-07-20 Laetitia Teodorescu , Katja Hofmann , Pierre-Yves Oudeyer

Edge-preserving image smoothing is an important step for many low-level vision problems. Though many algorithms have been proposed, there are several difficulties hindering its further development. First, most existing algorithms cannot…

Computer Vision and Pattern Recognition · Computer Science 2019-06-26 Feida Zhu , Zhetong Liang , Xixi Jia , Lei Zhang , Yizhou Yu

Accurate boundary detection in high-dimensional data remains a central challenge in unsupervised learning, particularly in the presence of non-linear structures and heterogeneous densities. In this work, we introduce Mean Curvature Boundary…

Machine Learning · Computer Science 2026-05-12 Alexandre L. M. Levada

Semi-supervised semantic segmentation (SSSS) is vital in computational pathology, where dense annotations are costly and limited. Existing methods often rely on pixel-level consistency, which propagates noisy pseudo-labels and produces…

Image and Video Processing · Electrical Eng. & Systems 2025-11-14 Ha-Hieu Pham , Minh Le , Han Huynh , Nguyen Quoc Khanh Le , Huy-Hieu Pham

Several problems in stochastic analysis are defined through their geometry, and preserving that geometric structure is essential to generating meaningful predictions. Nevertheless, how to design principled deep learning (DL) models capable…

Machine Learning · Computer Science 2023-03-10 Beatrice Acciaio , Anastasis Kratsios , Gudmund Pammer

Computational topology is an area that revisits topological problems from an algorithmic point of view, and develops topological tools for improved algorithms. We survey results in computational topology that are concerned with graphs drawn…

Computational Geometry · Computer Science 2017-09-06 Éric Colin de Verdière

Generative learning is a powerful tool for representation learning, and shows particular promise for problems in biomedical imaging. However, in this context, sampling from the distribution is secondary to finding representations of real…

Image and Video Processing · Electrical Eng. & Systems 2022-09-07 Simon Myles Thomas

With the advanced imaging technology, digital pathology imaging of tumor tissue slides is becoming a routine clinical procedure for cancer diagnosis. This process produces massive imaging data that capture histological details in high…

Applications · Statistics 2020-12-10 Esteban Fernández Morales , Cong Zhang , Guanghua Xiao , Chul Moon , Qiwei Li

High-confidence overlap prediction and accurate correspondences are critical for cutting-edge models to align paired point clouds in a partial-to-partial manner. However, there inherently exists uncertainty between the overlapping and…

Computer Vision and Pattern Recognition · Computer Science 2022-09-02 Zhilei Chen , Honghua Chen , Lina Gong , Xuefeng Yan , Jun Wang , Yanwen Guo , Jing Qin , Mingqiang Wei

Data augmentation is crucial for improving the robustness of face detection systems, especially under challenging conditions such as occlusion, illumination variation, and complex environments. Traditional copy paste augmentation often…

Computer Vision and Pattern Recognition · Computer Science 2025-12-15 Qiushi Guo