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We establish a new theory which gives a unified topological approach to data science, by being applicable both to point cloud data and to graph data, including networks beyond pairwise interactions. We generalize simplicial complexes and…

Algebraic Topology · Mathematics 2021-04-01 Jelena Grbić , Jie Wu , Kelin Xia , Guo-Wei Wei

In this work, we explore links between natural homology and persistent homology for the classification of directed spaces. The former is an algebraic invariant of directed spaces, a semantic model of concurrent programs. The latter was…

Algebraic Topology · Mathematics 2024-08-07 Cameron Calk , Eric Goubault , Philippe Malbos

Persistent homology has become an important tool for extracting geometric and topological features from data, whose multi-scale features are summarized in a persistence diagram. From a statistical perspective, however, persistence diagrams…

Statistics Theory · Mathematics 2022-06-07 Siddharth Vishwanath , Kenji Fukumizu , Satoshi Kuriki , Bharath Sriperumbudur

The Persistent Homology Transform (PHT) summarizes a shape in $\mathbb{R}^m$ by collecting persistence diagrams obtained from linear height filtrations in all directions on $\mathbb{S}^{m-1}$. It enjoys strong theoretical guarantees,…

Computational Geometry · Computer Science 2026-04-10 Michael Kerber , Elena Xinyi Wang

Persistence diagrams have been widely used to quantify the underlying features of filtered topological spaces in data visualization. In many applications, computing distances between diagrams is essential; however, computing these distances…

Computational Geometry · Computer Science 2021-08-12 Yu Qin , Brittany Terese Fasy , Carola Wenk , Brian Summa

Persistent homology (PH) is one of the most popular methods in Topological Data Analysis. Even though PH has been used in many different types of applications, the reasons behind its success remain elusive; in particular, it is not known…

Algebraic Topology · Mathematics 2023-01-18 Renata Turkeš , Guido Montúfar , Nina Otter

While standard persistent homology has been successful in extracting information from metric datasets, its applicability to more general data, e.g. directed networks, is hindered by its natural insensitivity to asymmetry. We study a…

Algebraic Topology · Mathematics 2017-04-17 Samir Chowdhury , Facundo Mémoli

Hypergraphs, encoding structured interactions among any number of system units, have recently proven a successful tool to describe many real-world biological and social networks. Here we propose a framework based on statistical inference to…

Social and Information Networks · Computer Science 2022-12-01 Martina Contisciani , Federico Battiston , Caterina De Bacco

As complex networks find applications in a growing range of disciplines, the diversity of naturally occurring and model networks being studied is exploding. The adoption of a well-developed collection of network taxonomies is a natural…

Combinatorics · Mathematics 2016-01-25 Ann Sizemore , Chad Giusti , Danielle Bassett

Persistent homology analysis provides means to capture the connectivity structure of data sets in various dimensions. On the mathematical level, by defining a metric between the objects that persistence attaches to data sets, we can…

Machine Learning · Computer Science 2019-06-12 Henri Riihimäki , José Licón-Saláiz

The aim of applied topology is to use and develop topological methods for applied mathematics, science and engineering. One of the main tools is persistent homology, an adaptation of classical homology, which assigns a barcode, i.e. a…

Algebraic Topology · Mathematics 2018-10-09 Sara Kalisnik Verovsek

Persistent homology provides a robust methodology to infer topological structures from point cloud data. Here we explore the persistent homology of point clouds embedded into a probabilistic setting, exploiting the theory of point…

Probability · Mathematics 2023-08-07 Daniel Spitz , Anna Wienhard

This paper aims to introduce a filtration analysis of sampled maps based on persistent homology, providing a new method for reconstructing the underlying maps. The key idea is to extend the definition of homology induced maps of…

Algebraic Topology · Mathematics 2019-12-19 Hiroshi Takeuchi

A method to apply and visualize persistent homology of time series is proposed. The method captures persistent features in space and time, in contrast to the existing procedures, where one usually chooses one while keeping the other fixed.…

Algebraic Topology · Mathematics 2024-12-17 Martina Flammer , Knut Hüper

This paper presents a new clustering algorithm for space-time data based on the concepts of topological data analysis and in particular, persistent homology. Employing persistent homology - a flexible mathematical tool from algebraic…

Machine Learning · Statistics 2019-10-28 Umar Islambekov , Yulia Gel

Persistent homology is an effective method for extracting topological information, represented as persistent diagrams, of spatial structure data. Hence it is well-suited for the study of protein structures. Attempts to incorporate…

Machine Learning · Computer Science 2024-08-01 An Wu , Yu Pan , Fuqi Zhou , Jinghui Yan , Chuanlu Liu

The structure representation of data distribution plays an important role in understanding the underlying mechanism of generating data. In this paper, we propose nearest prime simplicial complex approaches (NSC) by utilizing persistent…

Machine Learning · Computer Science 2015-03-19 Junping Zhang , Ziyu Xie , Stan Z. Li

We derive the relationship between the persistent homology barcodes of two dual filtered CW complexes. Applied to greyscale digital images, we obtain an algorithm to convert barcodes between the two different (dual) topological models of…

Algebraic Topology · Mathematics 2020-05-13 Adélie Garin , Teresa Heiss , Kelly Maggs , Bea Bleile , Vanessa Robins

Topological data analysis (TDA) is a rising branch in modern applied mathematics. It extracts topological structures as features of a given space and uses these features to analyze digital data. Persistent homology, one of the central tools…

Algebraic Topology · Mathematics 2025-05-26 Chuan-Shen Hu

Unravelling the block structure of a network is critical for studying macroscopic features and community-level dynamics. The weighted stochastic block model (WSBM), a variation of the traditional stochastic block model, is designed for…

Dynamical Systems · Mathematics 2021-08-04 Wooseok Jung
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