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Clustering is an important topic in algorithms, and has a number of applications in machine learning, computer vision, statistics, and several other research disciplines. Traditional objectives of graph clustering are to find clusters with…

Machine Learning · Computer Science 2020-11-11 Steinar Laenen , He Sun

Code classification is a difficult issue in program understanding and automatic coding. Due to the elusive syntax and complicated semantics in programs, most existing studies use techniques based on abstract syntax tree (AST) and graph…

Software Engineering · Computer Science 2025-09-25 Guang Yang , Tiancheng Jin , Liang Dou

Hypergraphs model higher-order relations that drive real-world decisions, from drug prescriptions to recommendations. A central structural signal in such data, beyond what pairwise relations can express, is interaction compositionality:…

Machine Learning · Computer Science 2026-05-19 Kyrie Zhao , Zehong Wang , Tianyi Ma , Fang Wu , Xiangru Tang , Pietro Lio , Sheng Wang , Yanfang Ye

Most existing methods for predicting drug-drug interactions (DDI) predominantly concentrate on capturing the explicit relationships among drugs, overlooking the valuable implicit correlations present between drug pairs (DPs), which leads to…

Machine Learning · Computer Science 2024-02-29 Mengying Jiang , Guizhong Liu , Yuanchao Su , Weiqiang Jin , Biao Zhao

One of the defining features of complex networks is the connectivity properties that we observe emerging from local interactions. Recently, hypergraphs have emerged as a versatile tool to model networks with non-dyadic, higher-order…

Physics and Society · Physics 2025-09-30 Berné L. Nortier , Simon Dobson , Federico Battiston

Hyperdimensional Computing (HDC) developed by Kanerva is a computational model for machine learning inspired by neuroscience. HDC exploits characteristics of biological neural systems such as high-dimensionality, randomness and a…

Machine Learning · Computer Science 2022-05-17 Igor Nunes , Mike Heddes , Tony Givargis , Alexandru Nicolau , Alex Veidenbaum

Graph representation learning (GRL) has emerged as an effective technique for modeling graph-structured data. When modeling heterogeneity and dynamics in real-world complex networks, GRL methods designed for complex heterogeneous temporal…

Social and Information Networks · Computer Science 2026-05-19 Huan Liu , Pengfei Jiao , Mengzhou Gao , Chaochao Chen , Di Jin

Extending community detection from pairwise networks to hypergraphs introduces fundamental theoretical challenges. Hypergraphs exhibit structural heterogeneity with no direct graph analogue: hyperedges of varying orders can connect nodes…

Social and Information Networks · Computer Science 2026-04-22 Jiaze Li , Michael T. Schaub , Leto Peel

Graph representations of solid state materials that encode only interatomic distance lack geometrical resolution, resulting in degenerate representations that may map distinct structures to equivalent graphs. Here we propose a hypergraph…

Materials Science · Physics 2024-11-20 Alexander J. Heilman , Weiyi Gong , Qimin Yan

Graphs are widely used to encapsulate a variety of data formats, but real-world networks often involve complex node relations beyond only being pairwise. While hypergraphs and hierarchical graphs have been developed and employed to account…

Machine Learning · Computer Science 2024-02-21 Zehui Li , Xiangyu Zhao , Mingzhu Shen , Guy-Bart Stan , Pietro Liò , Yiren Zhao

Graph Transformers (GTs) have made remarkable achievements in graph-level tasks. However, most existing works regard graph structures as a form of guidance or bias for enhancing node representations, which focuses on node-central…

Machine Learning · Computer Science 2024-12-10 Xiaorui Qi , Qijie Bai , Yanlong Wen , Haiwei Zhang , Xiaojie Yuan

While there has been much interest in adapting conventional clustering procedures---and in higher dimensions, persistent homology methods---to directed networks, little is known about the convergence of such methods. In order to even…

Computational Geometry · Computer Science 2022-12-20 Samir Chowdhury , Facundo Mémoli

Non-reciprocal interactions play a crucial role in many social and biological complex systems. While directionality has been thoroughly accounted for in networks with pairwise interactions, its effects in systems with higher-order…

Adaptation and Self-Organizing Systems · Physics 2025-10-22 Luca Gallo , Riccardo Muolo , Lucia Valentina Gambuzza , Vito Latora , Mattia Frasca , Timoteo Carletti

The problem of node-similarity in networks has motivated a plethora of such measures between node-pairs, which make use of the underlying graph structure. However, higher-order relations cannot be losslessly captured by mere graphs and…

Social and Information Networks · Computer Science 2021-11-02 Govind Sharma , Paarth Gupta , M. Narasihma Murty

Graphs are commonly used to characterise interactions between objects of interest. Because they are based on a straightforward formalism, they are used in many scientific fields from computer science to historical sciences. In this paper,…

Machine Learning · Statistics 2015-06-24 Pierre Latouche , Fabrice Rossi

Memory is an important cognitive function for humans. How a brain with such a small power can complete such a complex memory function, the working mechanism behind this is undoubtedly fascinating. Engram theory views memory as the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-13 Hui Wei , Weihua Miao , Fushun Li

In complex systems (e.g., communication, transportation, and biological networks), high robustness ensures sustained functionality and stability even when resisting attacks. However, the inherent structure complexity and the…

Physics and Society · Physics 2025-06-13 Xilong Qu , Wenbin Pei , Haifang Li , Qiang Zhang , Bing Xue , Mengjie Zhang

Graph neural networks (GNNs) have demonstrated promising performance across various chemistry-related tasks. However, conventional graphs only model the pairwise connectivity in molecules, failing to adequately represent higher-order…

Chemical Physics · Physics 2023-12-22 Junwu Chen , Philippe Schwaller

Comparing networks is essential for a number of downstream tasks, from clustering to anomaly detection. Despite higher-order interactions being critical for understanding the dynamics of complex systems, traditional approaches for network…

Physics and Society · Physics 2025-11-03 Helcio Felippe , Alec Kirkley , Federico Battiston

This paper presents several algorithms for hashing directed graphs. The algorithms given are capable of hashing entire graphs as well as assigning hash values to specific nodes in a given graph. The notion of node symmetry is made precise…

Discrete Mathematics · Computer Science 2023-06-21 Caleb Helbling