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End-to-end relation extraction (E2ERE) is an important task in information extraction, more so for biomedicine as scientific literature continues to grow exponentially. E2ERE typically involves identifying entities (or named entity…

Computation and Language · Computer Science 2023-04-05 Xuguang Ai , Ramakanth Kavuluru

Motivated by the fact that many relations cross the sentence boundary, there has been increasing interest in document-level relation extraction (DocRE). DocRE requires integrating information within and across sentences, capturing complex…

Computation and Language · Computer Science 2022-04-12 John Giorgi , Gary D. Bader , Bo Wang

Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is beneficial to learn these tasks jointly, which avoids the…

Computation and Language · Computer Science 2020-01-01 John Giorgi , Xindi Wang , Nicola Sahar , Won Young Shin , Gary D. Bader , Bo Wang

Despite efforts to distinguish three different evaluation setups (Bekoulis et al., 2018), numerous end-to-end Relation Extraction (RE) articles present unreliable performance comparison to previous work. In this paper, we first identify…

Computation and Language · Computer Science 2021-08-10 Bruno Taillé , Vincent Guigue , Geoffrey Scoutheeten , Patrick Gallinari

End-to-end (E2E) models fold the acoustic, pronunciation and language models of a conventional speech recognition model into one neural network with a much smaller number of parameters than a conventional ASR system, thus making it suitable…

Audio and Speech Processing · Electrical Eng. & Systems 2020-05-14 Bo Li , Shuo-yiin Chang , Tara N. Sainath , Ruoming Pang , Yanzhang He , Trevor Strohman , Yonghui Wu

Extracting relations from scientific literature is a fundamental task in biomedical NLP because entities and relations among them drive hypothesis generation and knowledge discovery. As literature grows rapidly, relation extraction (RE) is…

Computation and Language · Computer Science 2026-01-15 Aviv Brokman , Xuguang Ai , Yuhang Jiang , Shashank Gupta , Ramakanth Kavuluru

End-to-end relation extraction aims to identify named entities and extract relations between them. Most recent work models these two subtasks jointly, either by casting them in one structured prediction framework, or performing multi-task…

Computation and Language · Computer Science 2021-03-24 Zexuan Zhong , Danqi Chen

This paper summarises the experimental setup and results of the first shared task on end-to-end (E2E) natural language generation (NLG) in spoken dialogue systems. Recent end-to-end generation systems are promising since they reduce the…

Computation and Language · Computer Science 2018-11-22 Ondřej Dušek , Jekaterina Novikova , Verena Rieser

Research in Machine Learning (ML) and AI evolves rapidly. Information Extraction (IE) from scientific publications enables to identify information about research concepts and resources on a large scale and therefore is a pathway to improve…

Computation and Language · Computer Science 2025-11-13 Wolfgang Otto , Lu Gan , Sharmila Upadhyaya , Saurav Karmakar , Stefan Dietze

Recent Named Entity Recognition (NER) advancements have significantly enhanced text classification capabilities. This paper focuses on spoken NER, aimed explicitly at spoken document retrieval, an area not widely studied due to the lack of…

Computation and Language · Computer Science 2024-09-12 Moncef Benaicha , David Thulke , M. A. Tuğtekin Turan

In spite of the potential for ground-breaking achievements offered by large language models (LLMs) (e.g., GPT-3), they still lag significantly behind fully-supervised baselines (e.g., fine-tuned BERT) in relation extraction (RE). This is…

Computation and Language · Computer Science 2023-12-12 Zhen Wan , Fei Cheng , Zhuoyuan Mao , Qianying Liu , Haiyue Song , Jiwei Li , Sadao Kurohashi

Measurement and analysis of high energetic particles for scientific, medical or industrial applications is a complex procedure, requiring the design of sophisticated detector and data processing systems. The development of adaptive and…

Computational Physics · Physics 2025-10-30 Tobias Kortus , Ralf Keidel , Nicolas R. Gauger

Named Entity Recognition (NER) in the rare disease domain poses unique challenges due to limited labeled data, semantic ambiguity between entity types, and long-tail distributions. In this study, we evaluate the capabilities of GPT-4o for…

Computation and Language · Computer Science 2025-12-30 Nan Miles Xi , Yu Deng , Lin Wang

Usually, entity relation recognition systems either use a pipe-lined model that treats the entity tagging and relation identification as separate tasks or a joint model that simultaneously identifies the relation and entities. This paper…

Computation and Language · Computer Science 2020-09-21 Venkata Sasank Pagolu

Traditionally, most data-to-text applications have been designed using a modular pipeline architecture, in which non-linguistic input data is converted into natural language through several intermediate transformations. In contrast, recent…

Computation and Language · Computer Science 2019-11-28 Thiago Castro Ferreira , Chris van der Lee , Emiel van Miltenburg , Emiel Krahmer

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Graph Neural Networks (GNNs) have emerged as powerful tools for modeling graph-structured data and have been widely used in recommender systems, such as for capturing complex user-item and item-item relations. However, most industrial…

Machine Learning · Computer Science 2026-02-24 Rui Xue , Shichao Zhu , Liang Qin , Tianfu Wu

Recently, there has been a strong push to transition from hybrid models to end-to-end (E2E) models for automatic speech recognition. Currently, there are three promising E2E methods: recurrent neural network transducer (RNN-T), RNN…

Audio and Speech Processing · Electrical Eng. & Systems 2020-07-31 Jinyu Li , Yu Wu , Yashesh Gaur , Chengyi Wang , Rui Zhao , Shujie Liu

The sparsity of labelled data is an obstacle to the development of Relation Extraction models and the completion of databases in various biomedical areas. While being of high interest in drug-discovery, the natural-products literature,…

Computation and Language · Computer Science 2023-11-14 Maxime Delmas , Magdalena Wysocka , André Freitas

Entity and Relation Extraction (ERE) is an important task in information extraction. Recent marker-based pipeline models achieve state-of-the-art performance, but still suffer from the error propagation issue. Also, most of current ERE…

Computation and Language · Computer Science 2023-10-27 Zhaohui Yan , Songlin Yang , Wei Liu , Kewei Tu
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