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Background: Natural Language Processing (NLP) is widely used to extract clinical insights from Electronic Health Records (EHRs). However, the lack of annotated data, automated tools, and other challenges hinder the full utilisation of NLP…

Computation and Language · Computer Science 2023-06-23 Elias Hossain , Rajib Rana , Niall Higgins , Jeffrey Soar , Prabal Datta Barua , Anthony R. Pisani , Ph. D , Kathryn Turner}

The current state of adoption of well-structured electronic health records and integration of digital methods for storing medical patient data in structured formats can often considered as inferior compared to the use of traditional,…

Computation and Language · Computer Science 2021-12-13 Johann Frei , Frank Kramer

Pretrained neural models such as BERT, when fine-tuned to perform natural language inference (NLI), often show high accuracy on standard datasets, but display a surprising lack of sensitivity to word order on controlled challenge sets. We…

Computation and Language · Computer Science 2020-04-28 Junghyun Min , R. Thomas McCoy , Dipanjan Das , Emily Pitler , Tal Linzen

The extraction of critical patient information from Electronic Health Records (EHRs) poses significant challenges due to the complexity and unstructured nature of the data. Traditional machine learning approaches often fail to capture…

Computation and Language · Computer Science 2025-09-03 Zhimeng Luo , Abhibha Gupta , Adam Frisch , Daqing He

Automatic conversion of free-text radiology reports into structured data using Natural Language Processing (NLP) techniques is crucial for analyzing diseases on a large scale. While effective for tasks in widely spoken languages like…

Computation and Language · Computer Science 2024-05-24 Liam Hazan , Gili Focht , Naama Gavrielov , Roi Reichart , Talar Hagopian , Mary-Louise C. Greer , Ruth Cytter Kuint , Dan Turner , Moti Freiman

The application of Natural Language Processing (NLP) to specialized domains, such as the law, has recently received a surge of interest. As many legal services rely on processing and analyzing large collections of documents, automating such…

Computation and Language · Computer Science 2022-12-19 Wenyue Hua , Yuchen Zhang , Zhe Chen , Josie Li , Melanie Weber

The success of many natural language processing (NLP) tasks is bound by the number and quality of annotated data, but there is often a shortage of such training data. In this paper, we ask the question: "Can we combine a neural network (NN)…

Computation and Language · Computer Science 2018-05-16 Bingfeng Luo , Yansong Feng , Zheng Wang , Songfang Huang , Rui Yan , Dongyan Zhao

Named entity recognition (NER) is a fundamental part of extracting information from documents in biomedical applications. A notable advantage of NER is its consistency in extracting biomedical entities in a document context. Although…

Computation and Language · Computer Science 2022-10-25 Minbyul Jeong , Jaewoo Kang

This study explores the integration of Building Information Modeling (BIM) with Natural Language Processing (NLP) to automate the extraction of requirements from unstructured French Building Technical Specification (BTS) documents within…

Computation and Language · Computer Science 2025-08-20 Insaf Nahri , Romain Pinquié , Philippe Véron , Nicolas Bus , Mathieu Thorel

A large percentage of medical information is in unstructured text format in electronic medical record systems. Manual extraction of information from clinical notes is extremely time consuming. Natural language processing has been widely…

Information Retrieval · Computer Science 2019-08-16 Dianbo Liu , Dmitriy Dligach , Timothy Miller

The rising prevalence of mental health disorders necessitates the development of robust, automated tools for early detection and monitoring. Recent advances in Natural Language Processing (NLP), particularly transformer-based architectures,…

Computation and Language · Computer Science 2025-07-29 Khalid Hasan , Jamil Saquer , Mukulika Ghosh

Named entity recognition (NER) models often struggle with noisy inputs, such as those with spelling mistakes or errors generated by Optical Character Recognition processes, and learning a robust NER model is challenging. Existing robust NER…

Computation and Language · Computer Science 2024-07-29 Chaoyi Ai , Yong Jiang , Shen Huang , Pengjun Xie , Kewei Tu

Accurate extraction of breast cancer patients' phenotypes is important for clinical decision support and clinical research. Current models do not take full advantage of cancer domain-specific corpus, whether pre-training Bidirectional…

Information Retrieval · Computer Science 2022-03-10 Sicheng Zhou , Liwei Wang , Nan Wang , Hongfang Liu , Rui Zhang

Recent advances in natural language processing (NLP) can be largely attributed to the advent of pre-trained language models such as BERT and RoBERTa. While these models demonstrate remarkable performance on general datasets, they can…

The rapidly increasing volume of electronic health record (EHR) data underscores a pressing need to unlock biomedical knowledge from unstructured clinical texts to support advancements in data-driven clinical systems, including patient…

Computation and Language · Computer Science 2025-10-21 Manuela Daniela Danu , George Marica , Constantin Suciu , Lucian Mihai Itu , Oladimeji Farri

Natural language processing (NLP) of clinical trial documents can be useful in new trial design. Here we identify entity types relevant to clinical trial design and propose a framework called CT-BERT for information extraction from clinical…

Quantitative Methods · Quantitative Biology 2021-10-20 Xiong Liu , Greg L. Hersch , Iya Khalil , Murthy Devarakonda

Large language models (LLMs) excel at clinical information extraction but their computational demands limit practical deployment. Knowledge distillation--the process of transferring knowledge from larger to smaller models--offers a…

Computation and Language · Computer Science 2025-01-03 Karthik S. Vedula , Annika Gupta , Akshay Swaminathan , Ivan Lopez , Suhana Bedi , Nigam H. Shah

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

This paper presents a novel Natural Language Processing (NLP) framework for enhancing medical diagnosis through the integration of advanced techniques in data augmentation, feature extraction, and classification. The proposed approach…

Computation and Language · Computer Science 2025-02-12 Mohammad Ali Labbaf Khaniki , Sahabeh Saadati , Mohammad Manthouri

The introduction of computerized medical records in hospitals has reduced burdensome activities like manual writing and information fetching. However, the data contained in medical records are still far underutilized, primarily because…