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Disordered and amorphous materials often retain memories of perturbations they have experienced since preparation. Studying such memories is a gateway to understanding this challenging class of systems, yet it often requires the ability to…

Soft Condensed Matter · Physics 2023-02-21 Dor Shohat , Yoav Lahini

We propose a computational framework to study the growth and spread of bacterial biofilms on interfaces, as well as the action of antibiotics on them. Bacterial membranes are represented by boundaries immersed in a fluid matrix and subject…

Cell Behavior · Quantitative Biology 2022-01-11 Ana Carpio , Rafael Gonzalez-Albaladejo

One striking feature of bacterial motion is their ability to swim upstream along corners and crevices, by leveraging hydrodynamic interactions. This motion through anatomic ducts or medical devices might be at the origin of serious…

Soft Condensed Matter · Physics 2020-04-07 Nuris Figueroa-Morales , Aramis Rivera , Rodrigo Soto , Anke Lindner , Ernesto Altshuler , Eric Clement

Simulating the conditioned dynamics of diffusion processes, given their initial and terminal states, is an important but challenging problem in the sciences. The difficulty is particularly pronounced for rare events, for which the…

Machine Learning · Statistics 2026-04-23 Samuel Howard , Nikolas Nüsken , Jakiw Pidstrigach

Many motile microorganisms react to environmental light cues with a variety of motility responses guiding cells towards better conditions for survival and growth. The use of spatial light modulators could help to elucidate the mechanisms of…

Information diffusion is usually modeled as a process in which immutable pieces of information propagate over a network. In reality, however, messages are not immutable, but may be morphed with every step, potentially entailing large…

Social and Information Networks · Computer Science 2019-06-11 Manoel Horta Ribeiro , Kristina Gligorić , Robert West

Swimming bacteria create long-range velocity fields that stir a large volume of fluid and move around passive particles dispersed in the fluid. Recent experiments and simulations have shown that long-time mean-squared displacement of…

Soft Condensed Matter · Physics 2013-08-20 Alexander Morozov , Davide Marenduzzo

In this paper, we study a nonlinear boundary diffusion equation of porous medium type arising from a boundary control problem. We give a complete and sharp characterization of the asymptotic behavior of its solutions, and prove the…

Analysis of PDEs · Mathematics 2024-02-07 Tianling Jin , Jingang Xiong , Xuzhou Yang

We have studied a model of a random walk in a quenched random environment. In addition to featuring anomalous diffusion and localization, for special regimes of disorder parameters the particle density decomposes into multi-Gaussian…

Statistical Mechanics · Physics 2010-11-24 Tapio Simula , Mikko Stenlund

Turbulence, left unforced, decays and invades the surrounding quiescent fluid. Though ubiquitous, this simple phenomenon has proven hard to capture within a simple and general framework. Experiments in conventional turbulent flow chambers…

Fluid Dynamics · Physics 2025-06-30 Takumi Matsuzawa , Minhui Zhu , Nigel Goldenfeld , William T. M. Irvine

The transport of an infinitely thin, hard rod in a random, dense array of point obstacles is investigated by molecular dynamics simulations. Our model mimics the sterically hindered dynamics in dense needle liquids. The center-of-mass…

Statistical Mechanics · Physics 2008-09-22 Felix Höfling , Erwin Frey , Thomas Franosch

Current theories of diffusiophoresis in porous media are limited to a porous medium saturated with a valence symmetric electrolyte. A predictive model for diffusiophoresis in porous media saturated with a valence asymmetric electrolyte, or…

Soft Condensed Matter · Physics 2024-12-03 Siddharth Sambamoorthy , Henry C. W. Chu

Bacteria can form a great variety of spatially heterogeneous cell density patterns, ranging from simple concentric rings to dynamical spiral waves appearing in growing colonies. These pattern formation phenomena are important as they…

Populations and Evolution · Quantitative Biology 2025-01-17 John S. Chuang , Riccardo Rao , Stanislas Leibler

Over the past few years the displacement statistics of self-propelled particles has been intensely studied, revealing their long-time diffusive behavior. Here, we demonstrate that a concerted combination of boundary conditions and switching…

Soft Condensed Matter · Physics 2015-05-29 Andreas M. Menzel

In this study, we develop a saturation-dependent treatment of dispersion in porous media using concepts from critical path analysis, cluster statistics of percolation, and fractal scaling of percolation clusters. We calculate spatial solute…

Fluid Dynamics · Physics 2015-06-11 B. Ghanbarian-Alavijeh , Thomas E. Skinner , Allen G. Hunt

We consider a possibly degenerate porous media type equation over all of $\R^d$ with $d = 1$, with monotone discontinuous coefficients with linear growth and prove a probabilistic representation of its solution in terms of an associated…

Probability · Mathematics 2014-06-30 Viorel Barbu , Michael Roeckner , Francesco Russo

We present a diagrammatic theory for coherent backscattering from disordered dilute media in the nonlinear regime. The approach is non-perturbative in the strength of the nonlinearity. We show that the coherent backscattering enhancement…

Mesoscale and Nanoscale Physics · Physics 2009-11-13 Thomas Wellens , Benoit Gremaud

Many chemotactic bacteria inhabit environments in which chemicals appear as localized pulses and evolve by processes such as diffusion and mixing. We show that, in such environments, physical limits on the accuracy of temporal gradient…

Biological Physics · Physics 2016-01-19 Andrew M. Hein , Douglas R. Brumley , Francesco Carrara , Roman Stocker , Simon A. Levin

Time plays an essential role in the diffusion of information, influence and disease over networks. In many cases we only observe when a node copies information, makes a decision or becomes infected -- but the connectivity, transmission…

Social and Information Networks · Computer Science 2011-05-05 Manuel Gomez Rodriguez , David Balduzzi , Bernhard Schölkopf

In this paper, we study the competition of two diffusion processes for achieving the maximum possible diffusion in an area. This competition, however, does not occur in the same circumstance; one of these processes is a normal diffusion…

Physics and Society · Physics 2020-10-20 Moein Khalighi , Jamshid Ardalankia , Abbas Karimi Rizi , Haleh Ebadi , Gholamreza Jafari