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Related papers: In vivo optogenetic identification and manipulatio…

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Optogenetics has emerged as an exciting tool for manipulating neural activity, which in turn, can modulate behavior in live organisms. However, detecting the response to the optical stimulation requires electrophysiology with physical…

The emerging field of optogenetics allows for optical activation or inhibition of neurons and other tissue in the nervous system. In 2005 optogenetic proteins were expressed in the nematode C. elegans for the first time. Since then, C.…

Neurons and Cognition · Quantitative Biology 2013-05-13 Steven J. Husson , Alexander Gottschalk , Andrew M. Leifer

Humans and animals exhibit a range of interesting behaviors in dynamic environments, and it is unclear how our brains actively reformat this dense sensory information to enable these behaviors. Experimental neuroscience is undergoing a…

Neurons and Cognition · Quantitative Biology 2023-11-07 Aran Nayebi

A salient feature of prefrontal cortex organization is the vast diversity of cell types that support the temporal integration of events required for sculpting future responses. A major obstacle in understanding the routing of information…

Neurons and Cognition · Quantitative Biology 2012-04-04 Michael V. Baratta , Shinya Nakamura , Peter Dobelis , Matthew B. Pomrenze , Samuel D. Dolzani , Donald C. Cooper

Mammalian brain is a complex organ that contains billions of neurons. These neurons form various neural circuits that control the perception, cognition, emotion and behavior. Developing in vivo neuronal labeling and imaging techniques is…

Neurons and Cognition · Quantitative Biology 2022-11-15 Shana Li , Xiang Xu , Canjun Li , Ziyan Xu , Qiong Ye , Yan Zhang , Chunlei Cang , Jie Wen

The serotonergic system modulates brain processes via functionally distinct subpopulations of neurons with heterogeneous properties, including their electrophysiological activity. In extracellular recordings, serotonergic neurons to be…

Neurons and Cognition · Quantitative Biology 2024-05-10 Daniele Corradetti , Alessandro Bernardi , Renato Corradetti

Identifying the physiological processes underlying the emergence and maintenance of consciousness is one of the most fundamental problems of neuroscience, with implications ranging from fundamental neuroscience to the treatment of patients…

Neurons and Cognition · Quantitative Biology 2019-07-29 Julien Modolo , Mahmoud Hassan , Fabrice Wendling , Pascal Benquet

Neural networks have been employed for a wide range of processing applications like image processing, motor control, object detection and many others. Living neural networks offer advantages of lower power consumption, faster processing,…

Emerging Technologies · Computer Science 2024-01-22 Sanjana Shetty

Precise spatial and temporal manipulation of neural activity in specific genetically defined cell populations is now possible with the advent of optogenetics. The emerging field of optogenetics consists of a set of naturally-occurring and…

Neurons and Cognition · Quantitative Biology 2012-08-15 Shinya Nakamura , Michael V. Baratta , Matthew B. Pomrenze , Samuel D. Dolzani , Donald C. Cooper

Characterizing interactions between brain areas is a fundamental goal of systems neuroscience. While such analyses are possible when areas are recorded simultaneously, it is rare to observe all combinations of areas of interest within a…

Neurons and Cognition · Quantitative Biology 2025-10-15 Ji Xia , Yizi Zhang , Shuqi Wang , Genevera I. Allen , Liam Paninski , Cole Lincoln Hurwitz , Kenneth D. Miller

Cellular behavior is governed by gene regulatory processes that are intrinsically dynamic and nonlinear, and are subject to non-negligible amounts of random fluctuations. Such conditions are ubiquitous in physical systems, where they have…

Molecular Networks · Quantitative Biology 2011-09-21 Jordi Garcia-Ojalvo

Recent advances in techniques for monitoring and perturbing neural populations have greatly enhanced our ability to study circuits in the brain. In particular, two-photon holographic optogenetics now enables precise photostimulation of…

Neurons and Cognition · Quantitative Biology 2025-05-09 Andrew Wagenmaker , Lu Mi , Marton Rozsa , Matthew S. Bull , Karel Svoboda , Kayvon Daie , Matthew D. Golub , Kevin Jamieson

Advances in optical neuroimaging techniques now allow neural activity to be recorded with cellular resolution in awake and behaving animals. Brain motion in these recordings pose a unique challenge. The location of individual neurons must…

Neurons and Cognition · Quantitative Biology 2017-05-22 Jeffrey P. Nguyen , Ashley N. Linder , George S. Plummer , Joshua W. Shaevitz , Andrew M. Leifer

Objective: Optogenetic manipulations of excitable cells enable activating or silencing specific types of neurons. By expressing two types of exogenous proteins, a single neuron can be depolarized using light of one wavelength and…

Systems and Control · Electrical Eng. & Systems 2022-11-28 Ori Noked , Amir Levi , Shirly Someck , Ortal Amber-Vitos , Eran Stark

The functioning of the human brain, nervous system and heart is based on the conduction of electrical signals. These electrical signals also create magnetic fields which extend outside the human body. Highly sensitive magnetometers, such as…

Medical Physics · Physics 2022-12-07 Kasper Jensen , Bo Hjorth Bentzen , Eugene S. Polzik

Biotechnology can benefit from dynamic control to improve production efficiency. In this context, optogenetics enables modulation of gene expression using light as an external input, allowing fine-tuning of protein levels to unlock dynamic…

Systems and Control · Electrical Eng. & Systems 2026-05-11 Sebastián Espinel-Ríos

We present a high-throughput optogenetic illumination system capable of simultaneous closed-loop light delivery to specified targets in populations of moving Caenorhabditis elegans. The instrument addresses three technical challenges: it…

Neurons and Cognition · Quantitative Biology 2022-02-01 Mochi Liu , Sandeep Kumar , Anuj K Sharma , Andrew M Leifer

Noise plays a crucial role in the regulation of cellular and organismal function and behavior. Exploring noise's impact is key to understanding fundamental biological processes, such as gene expression, signal transduction, and the…

Molecular Networks · Quantitative Biology 2025-12-16 Chuanbo Liu , Yu Fu , Lu Lin , Elliot L. Elson , Jin Wang

It has been hypothesized that Gamma cortical oscillations play important roles in numerous cognitive processes and may involve psychiatric conditions including anxiety, schizophrenia, and autism. Gamma rhythms are commonly observed in many…

Neurons and Cognition · Quantitative Biology 2021-03-11 Fereshteh Arab , Sareh Rostami , Mohammad Dehghani-Habibabadi , Vahid Salari , Mir-Shahram Safari

Animal behavior serves as a reliable indicator of the adaptation of organisms to their environment and their overall well-being. Through rigorous observation of animal actions and interactions, researchers and observers can glean valuable…

Machine Learning · Computer Science 2024-05-24 Edoardo Fazzari , Donato Romano , Fabrizio Falchi , Cesare Stefanini
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