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We use molecular dynamics simulations to study the dynamics of an ensemble of interacting self-propelled semi-flexible polymers in contact with a thermal bath. Our intention is to model complex systems of biological interest. We find that…

Soft Condensed Matter · Physics 2011-05-06 Davide Loi , Stefano Mossa , Leticia F. Cugliandolo

The high computational expense of simulating light through ray-tracing in large, sparsely instrumented particle detectors such as IceCube and Antares is a critical outstanding problem in particle physics. When the detector is sparsely…

High Energy Physics - Experiment · Physics 2018-11-13 Gabriel H. Collin

The turbulent diffusion of Lagrangian tracer particles has been studied in a flow on the surface of a large tank of water and in computer simulations. The effect of flow compressibility is captured in images of particle fields. The velocity…

Chaotic Dynamics · Physics 2009-11-10 John R. Cressman , Walter I. Goldburg , Joerg Schumacher

Interacting particles diffusing in single-file is a fundamental model of transport in narrow channels where particles cannot bypass each other. An important result has been obtained by Kollmann [Phys. Rev. Lett. 90, 180602 (2003)] for the…

Statistical Mechanics · Physics 2025-07-24 Théotim Berlioz , Olivier Bénichou , Aurélien Grabsch

A particle with internal unobserved states diffusing in a force field will generally display effective advection-diffusion. The drift velocity is proportional to the mobility averaged over the internal states, or effective mobility, while…

Statistical Mechanics · Physics 2017-10-13 Erik Aurell , Stefano Bo

We study the dynamics of a tracer particle subject to a constant driving force $E$ in a one-dimensional lattice gas of hard-core particles whose transition rates are symmetric. We show that the mean displacement of the driven tracer grows…

Condensed Matter · Physics 2009-10-28 S. F. Burlatsky , G. Oshanin , M. Morea , W. P. Reinhardt

The role of incoherent tunneling in the diffusion of light atoms on surfaces is investigated. With this purpose, a Chudley-Elliot master equation constrained to nearest neighbors is considered within the Grabert-Weiss approach to quantum…

Statistical Mechanics · Physics 2013-09-10 A. S. Sanz , R. Martinez-Casado , S. Miret-Artes

Experiment, theory, and simulation are employed to understand the dispersion of colloidal particles in a periodic array of oscillating harmonic traps generated by optical tweezers. In the presence of trap oscillation, a non-monotonic and…

Soft Condensed Matter · Physics 2023-01-18 Joseph M. Barakat , Sho C. Takatori

Experimental results for passive tracer dispersion in the turbulent surface layer under convective conditions are presented. In this case, the dispersion of tracer particles is determined by the interplay of two mechanisms: buoyancy and…

Chaotic Dynamics · Physics 2014-08-26 Alex Skvortsov , Milan Jamriska , Timothy C DuBois

We study the thermal Markovian diffusion of tracer particles in a 2D medium with spatially-varying diffusivity $D(r)$, mimicking recently measured, heterogeneous maps of the apparent diffusion coefficient in biological cells. For this…

Statistical Mechanics · Physics 2014-12-24 Andrey G. Cherstvy , Aleksei V. Chechkin , Ralf Metzler

We study how the stationary dynamics of an oscillator chain is modified when coupled to a bath of run-and-tumble particles. First, assuming time-scale separation, we derive the induced Langevin chain dynamics with explicit expressions for…

Statistical Mechanics · Physics 2026-05-18 Aaron Beyen , Christian Maes , Ion Santra

Brownian motion is widely used as a paradigmatic model of diffusion in equilibrium media throughout the physical, chemical, and biological sciences. However, many real world systems, particularly biological ones, are intrinsically…

Statistical Mechanics · Physics 2020-06-04 Kiyoshi Kanazawa , Tomohiko G. Sano , Andrea Cairoli , Adrian Baule

We use large-eddy simulations to study the penetration of a buoyant plume carrying a passive tracer into a stably stratified layer with constant buoyancy frequency. Using a buoyancy-tracer volume distribution, we develop a method for…

Fluid Dynamics · Physics 2024-07-18 Charles Powell , Peter Haynes , John Taylor

This paper is concerned with the effective transport properties of heterogeneous media in which there is a high contrast between the phase diffusivities. In this case the transient response of the slow phase induces a memory effect at the…

Computational Physics · Physics 2018-10-23 Laurence Brassart , Laurent Stainier

This research presents a framework for describing the average velocity magnitude of an accelerated, self-propelled Brownian particle diffusing in a thermal fluid and confined by a harmonic external potential. The system is immersed in a…

Statistical Mechanics · Physics 2026-05-05 Pedro J. Colmenares

Tracer diffusion and hydrodynamic dispersion in two-dimensional fractures with self-affine roughness is studied by analytic and numerical methods. Numerical simulations were performed via the lattice-Boltzmann approach, using a new boundary…

Statistical Mechanics · Physics 2016-08-31 German Drazer , Joel Koplik

We present a deep-learning based tracking objects of interest in walking droplet and granular intruder experiments. In a typical walking droplet experiment, a liquid droplet, known as \textit{walker}, propels itself laterally on the free…

Computer Vision and Pattern Recognition · Computer Science 2023-11-17 Erdi Kara , George Zhang , Joseph J. Williams , Gonzalo Ferrandez-Quinto , Leviticus J. Rhoden , Maximilian Kim , J. Nathan Kutz , Aminur Rahman

Wavelet Monte Carlo dynamics simulations are used to study the dynamics of passive particles in the presence of microswimmers, taking account of the often-omitted thermal motion alongside the hydrodynamic flows generated by the swimmers.…

Soft Condensed Matter · Physics 2021-07-23 Oliver T. Dyer , Robin C. Ball

We develop a theory of enhanced diffusivity and skewness of the longitudinal distribution of a diffusing tracer advected by a periodic time-varying shear flow in a straight channel. Although applicable to general fluid flow, we restrict the…

Fluid Dynamics · Physics 2023-04-20 Lingyun Ding , Robert Hunt , Hunter Woodie , Richard M. McLaughlin

Transport of tracer particles through mesh-like environments such as biological hydrogels and polymer matrices is ubiquitous in nature. These tracers could be passive, such as colloids or active (self-propelled), such as synthetic…

Soft Condensed Matter · Physics 2022-12-08 Praveen Kumar , Rajarshi Chakrabarti
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