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A minimal model for studying the mechanical properties of amorphous solids is a disordered network of point masses connected by unbreakable springs. At a critical value of its mean connectivity, such a network becomes fragile: it undergoes…

Soft Condensed Matter · Physics 2014-03-05 Stephan Ulrich , Nitin Upadhyaya , Bas van Opheusden , Vincenzo Vitelli

We present Linear Diffusion Networks (LDNs), a novel architecture that reinterprets sequential data processing as a unified diffusion process. Our model integrates adaptive diffusion modules with localized nonlinear updates and a…

Machine Learning · Computer Science 2025-03-27 Jacob Fein-Ashley

Bone structure in mammals involves a complex network of channels (Havers and Volkmann channels) required to nourish the bone marrow cells. This work describes how three-dimensional reconstructions of such systems can be obtained and…

Tissues and Organs · Quantitative Biology 2007-09-19 Luciano da Fontoura Costa , Matheus Palhares Viana , Marcelo E. Beletti

In this paper, we tackle the problem of convolutional neural network design. Instead of focusing on the design of the overall architecture, we investigate a design space that is usually overlooked, i.e. adjusting the channel configurations…

Computer Vision and Pattern Recognition · Computer Science 2021-05-25 Yawei Li , Wen Li , Martin Danelljan , Kai Zhang , Shuhang Gu , Luc Van Gool , Radu Timofte

The transport properties of disordered systems are known to depend critically on dimensionality. We study the diffusion coefficient of a quantum particle confined to a lattice on the surface of a tube, where it scales between the 1D and 2D…

Mesoscale and Nanoscale Physics · Physics 2016-05-18 Chern Chuang , Chee Kong Lee , Jeremy M. Moix , Jasper Knoester , Jianshu Cao

One of the basic assumptions in organic field-effect transistors, the most fundamental device unit in organic electronics, is that charge transport occurs two-dimensionally in the first few molecular layers near the dielectric interface.…

Mesoscale and Nanoscale Physics · Physics 2016-01-11 Yuhan Zhang , Jingsi Qiao , Si Gao , Fengrui Hu , Daowei He , Bing Wu , Ziyi Yang , Bingchen Xu , Yun Li , Yi Shi , Wei Ji , Peng Wang , Xiaoyong Wang , Min Xiao , Hangxun Xu , Jian-Bin Xu , Xinran Wang

Hierarchical tree structures are common in many real-world systems, from tree roots and branches to neuronal dendrites and biologically inspired artificial neural networks, as well as in technological networks for organizing and searching…

Statistical Mechanics · Physics 2025-02-04 Davide Cipollini , Lambert Schomaker

This note provides a family of classification problems, indexed by a positive integer $k$, where all shallow networks with fewer than exponentially (in $k$) many nodes exhibit error at least $1/6$, whereas a deep network with 2 nodes in…

Machine Learning · Computer Science 2015-09-30 Matus Telgarsky

The experimental actualisation of organoids modelling organs from brains to pancreases has revealed that much of the diverse morphologies of organs are emergent properties of simple intercellular "rules" and not the result of top-down…

Tissues and Organs · Quantitative Biology 2019-10-07 Julius B. Kirkegaard , Bjarke F. Nielsen , Ala Trusina , Kim Sneppen

We comprehensively studied the morphology of the self-organized effective network structures that form in simple coupled maps with interelement synchronization-dependent connection changes. Based on the parameter values, the spontaneous…

Adaptation and Self-Organizing Systems · Physics 2022-02-09 Taito Nakanishi , Masashi Fujii , Akinori Awazu

In previous work [Phys. Rev. X 5, 021020 (2015)], it was shown that stealthy hyperuniform systems can be regarded as hard spheres in Fourier-space in the sense that the the structure factor is exactly zero in a spherical region around the…

Statistical Mechanics · Physics 2024-04-30 Peter K. Morse , Paul J. Steinhardt , Salvatore Torquato

Laminar shear flows can display large non-modal perturbation growth, often through the lift-up mechansm, and can undergo subcritical transition to turbulence. The process is three-dimensional. Two-dimensional (2D) spanwise-independent…

Fluid Dynamics · Physics 2024-05-01 Sharath Jose

Transport of dense core vesicles (DCVs) in neurons is crucial for distributing molecules like neuropeptides and growth factors. We studied the experimental trajectories of dynein-driven directed movement of DCVs in the ALA neuron C. elegans…

Subcellular Processes · Quantitative Biology 2025-03-04 Anna Gavrilova , Nickolay Korabel , Victoria J. Allan , Sergei Fedotov

The connectivity of individual neurons of large neural networks determine both the steady state activity of the network and its answer to external stimulus. Highly diluted random networks have zero activity. We show that increasing the…

Condensed Matter · Physics 2008-02-03 Albert-László Barabási

At all scales, porous materials stir interstitial fluids as they are advected, leading to complex distributions of matter and energy. Of particular interest is whether porous media naturally induce chaotic advection at the Darcy scale, as…

Fluid Dynamics · Physics 2025-10-03 Daniel R. Lester , Michael G. Trefry , Guy Metcalfe , Marco Dentz

Self-regulation of living tissue as an example of self-organization phenomena in hierarchical systems of biological, ecological, and social nature is under consideration. The characteristic feature of these systems is the absence of any…

Medical Physics · Physics 2009-11-30 Wassily Lubashevsky , Ihor Lubashevsky , Reinhard Mahnke

We characterize the order-disorder transition in a model lipid bilayer using molecular dynamics simulations. We find that the ordered phase is hexatic. In particular, in-plane structures possess a finite concentration of 5-7 disclination…

Water transport in wood is vital for the survival of trees. With synchrotron radiation X-ray tomographic microscopy (SRXTM), it becomes possible to characterize and quantify the 3D network formed by vessels that are responsible for…

Materials Science · Physics 2015-09-15 Philipp Hass , Falk K. Wittel , S. A. McDonald , F. Marone , M. Stampanoni , Hans J. Herrmann , Peter Niemz

Self-organization through adaptive rewiring of random neural networks generates brain-like topologies comprising modular small-world structures with rich club effects, merely as the product of optimizing the network topology. In the nervous…

Neurons and Cognition · Quantitative Biology 2022-11-04 Jia Li , Ilias Rentzeperis , Cees van Leeuwen

Transport networks are crucial to the functioning of natural systems and technological infrastructures. For flow networks in many scenarios, such as rivers or blood vessels, acyclic networks (i.e., trees) are optimal structures when…

Adaptation and Self-Organizing Systems · Physics 2019-12-05 Erik Andreas Martens , Konstantin Klemm