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At the intersection of the rapidly growing biological data landscape and advancements in Natural Language Processing (NLP), protein language models (PLMs) have emerged as a transformative force in modern research. These models have achieved…

Biomolecules · Quantitative Biology 2025-02-12 Lei Wang , Xudong Li , Han Zhang , Jinyi Wang , Dingkang Jiang , Zhidong Xue , Yan Wang

Testing is an integral part of the software development process. Yet, writing tests is time-consuming and therefore often neglected. Classical test generation tools such as EvoSuite generate behavioral test suites by optimizing for…

Software Engineering · Computer Science 2023-10-04 Nikitha Rao , Kush Jain , Uri Alon , Claire Le Goues , Vincent J. Hellendoorn

Unit testing is a fundamental practice in modern software engineering, with the aim of ensuring the correctness, maintainability, and reliability of individual software components. Very recently, with the advances in Large Language Models…

Software Engineering · Computer Science 2025-06-19 Quanjun Zhang , Chunrong Fang , Siqi Gu , Ye Shang , Zhenyu Chen , Liang Xiao

Large Language Models (LLMs) have become widely used for Software Engineering (SE) tasks, spanning from function-level code generation to complex repository-level workflows. However, the high latency of autoregressive inference remains a…

Software Engineering · Computer Science 2026-05-05 Yijia Li , Junkai Chen , Xing Hu , Xin Xia

Transformers are the current state-of-the-art of natural language processing in many domains and are using traction within software engineering research as well. Such models are pre-trained on large amounts of data, usually from the general…

Software Engineering · Computer Science 2022-05-16 Julian von der Mosel , Alexander Trautsch , Steffen Herbold

Large Language Models (LLMs) are frequently discussed in academia and the general public as support tools for virtually any use case that relies on the production of text, including software engineering. Currently there is much debate, but…

Software Engineering · Computer Science 2024-05-22 Ranim Khojah , Mazen Mohamad , Philipp Leitner , Francisco Gomes de Oliveira Neto

Machine learning (ML) techniques increase the effectiveness of software engineering (SE) lifecycle activities. We systematically collected, quality-assessed, summarized, and categorized 83 reviews in ML for SE published between 2009-2022,…

Software Engineering · Computer Science 2023-12-05 Zoe Kotti , Rafaila Galanopoulou , Diomidis Spinellis

Large Language Models (LLMs) are increasingly integrated into software applications, giving rise to a broad class of prompt-enabled systems, in which prompts serve as the primary 'programming' interface for guiding system behavior. Building…

Software Engineering · Computer Science 2026-01-28 Zhenpeng Chen , Chong Wang , Weisong Sun , Xuanzhe Liu , Jie M. Zhang , Yang Liu

The discussion around AI-Engineering, that is, Software Engineering (SE) for AI-enabled Systems, cannot ignore a crucial class of software systems that are increasingly becoming AI-enhanced: Those used to enable or support the SE process,…

Software Engineering · Computer Science 2026-01-28 Himon Thakur , Armin Moin

The rapid development of large language models (LLMs) has significantly transformed the field of artificial intelligence, demonstrating remarkable capabilities in natural language processing and moving towards multi-modal functionality.…

The rise of large language models (LLMs) has led to dramatic improvements across a wide range of natural language tasks. Their performance on certain tasks can be further enhanced by incorporating test-time reasoning techniques. These…

Software Engineering · Computer Science 2026-01-13 Saurabh Pujar , Ira Ceka , Irene Manotas , Gail Kaiser , Baishakhi Ray , Shyam Ramji

Large language models (LLMs) with billions of parameters and pretrained on massive amounts of data are now capable of near or better than state-of-the-art performance in a variety of downstream natural language processing tasks. Neural…

Computation and Language · Computer Science 2024-07-08 Victor Agostinelli , Max Wild , Matthew Raffel , Kazi Ahmed Asif Fuad , Lizhong Chen

The rapid advancements in large language models (LLMs) have greatly expanded the potential for automated code-related tasks. Two primary methodologies are used in this domain: prompt engineering and fine-tuning. Prompt engineering involves…

Software Engineering · Computer Science 2025-02-21 Jiho Shin , Clark Tang , Tahmineh Mohati , Maleknaz Nayebi , Song Wang , Hadi Hemmati

Motivation. Large language models (LLMs) have exhibited remarkable proficiency in diverse software engineering (SE) tasks. Handling such tasks typically involves acquiring foundational coding knowledge on large, general-purpose datasets…

Software Engineering · Computer Science 2024-08-02 José Antonio Hernández López , Boqi Chen , Mootez Saaz , Tushar Sharma , Dániel Varró

Natural Language Processing (NLP) has transformed various fields beyond linguistics by applying techniques originally developed for human language to the analysis of biological sequences. This review explores the application of NLP methods…

Computation and Language · Computer Science 2025-06-04 Ella Rannon , David Burstein

Deep Learning (DL) is being used nowadays in many traditional Software Engineering (SE) problems and tasks. However, since the renaissance of DL techniques is still very recent, we lack works that summarize and condense the most recent and…

Software Engineering · Computer Science 2020-12-08 Fabio Ferreira , Luciana Lourdes Silva , Marco Tulio Valente

Autoregressive Large Language Models (AR-LLMs) are widely used in software engineering (SE) but face limitations in processing code structure information and suffer from high inference latency. Diffusion LLMs (DLLMs) offer a promising…

Software Engineering · Computer Science 2025-10-07 Jingyao Zhang , Tianlin Li , Xiaoyu Zhang , Qiang Hu , Bin Shi

Executing computer programs described in natural language has long been a pursuit of computer science. With the advent of enhanced natural language understanding capabilities exhibited by large language models (LLMs), the path toward this…

Computation and Language · Computer Science 2024-03-15 Xin Zheng , Qiming Zhu , Hongyu Lin , Yaojie Lu , Xianpei Han , Le Sun

This paper presents a detailed case study examining the application of Large Language Models (LLMs) in the construction of test cases within the context of software engineering. LLMs, characterized by their advanced natural language…

The fields of generative AI and transfer learning have experienced remarkable advancements in recent years especially in the domain of Natural Language Processing (NLP). Transformers have been at the heart of these advancements where the…

Computation and Language · Computer Science 2024-02-28 Majd Saleh , Stéphane Paquelet