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Due to the lack of long-range order, it remains challenging to characterize the structure of disordered solids and understand the nature of the glass transition. Here we propose a new structural order parameter by taking into account…

Soft Condensed Matter · Physics 2024-08-26 Ding Xu , Qinyi Liao , Ning Xu

To model discriminative, i.e. competition induced, self-thinning in even-aged forest stands a concept has been explored that discriminative mortality alters spatial arrangement of trees which in turn alters the mortality. Function of…

Populations and Evolution · Quantitative Biology 2016-09-30 Vladimir L. Gavrikov , Rem G. Khlebopros

This study introduces a novel theoretical framework, the Stacked Autoencoder Evolution Hypothesis, which proposes that biological evolutionary systems operate through multi-layered self-encoding and decoding processes, analogous to stacked…

Neural and Evolutionary Computing · Computer Science 2026-02-03 Hiroyuki Iizuka

Geometric frustration appears in a broad range of systems, generally emerging as disordered ground configurations, thereby impeding understanding of the phenomenon's underlying mechanics. We report on a continuum system featuring locally…

Applied Physics · Physics 2021-06-04 Janav P. Udani , Andres F. Arrieta

We study the propagation of waves in a set of absorbing subwavelength scatterers positioned on a stealth hyperuniform point pattern. We show that spatial correlations in the disorder substantially enhance absorption compared to a fully…

Optics · Physics 2019-03-27 Florian Bigourdan , Romain Pierrat , Rémi Carminati

Dryland vegetation ecosystems are known to be susceptible to critical transitions between alternative stable states when subjected to external forcing. Such transitions are often discussed through the framework of bifurcation theory, but…

Computational Physics · Physics 2025-05-16 Daniel Dylewsky , Sonia Kéfi , Madhur Anand , Chris T. Bauch

We motivate and analyze a simple model for the formation of banded vegetation patterns. The model incorporates a minimal number of ingredients for vegetation growth in semi-arid landscapes. It allows for comprehensive analysis and sheds new…

Pattern Formation and Solitons · Physics 2022-07-04 Arnd Scheel , Jasper Weinburd

During the last decade, network approaches became a powerful tool to describe protein structure and dynamics. Here we review the links between disordered proteins and the associated networks, and describe the consequences of local,…

Transitions from turbulence to order are studied experimentally in thin fluid layers and magnetically confined toroidal plasma. It is shown that turbulence self-organizes through the mechanism of spectral condensation. The spectral…

Plasma Physics · Physics 2009-11-10 M. G. Shats , H. Xia , H. Punzmann

Multicellular organisms comprise a diverse collection of stable tissues built from different cell types. It remains unclear how large numbers of interacting cells can precisely coordinate their gene expression during tissue…

Biological Physics · Physics 2022-10-31 Matthew Smart , Anton Zilman

The scarcity of water characterising drylands forces vegetation to adopt appropriate survival strategies. Some of these generate water-vegetation feedback mechanisms that can lead to spatial self-organisation of vegetation, as it has been…

Biological Physics · Physics 2013-08-30 John Realpe-Gomez , Mara Baudena , Tobias Galla , Alan J. McKane , Max Rietkerk

Anthropogenic activity threatens biodiversity through climate change, habitat fragmentation, and increasing frequency and scale of disturbance. Various theoretical studies have sought to shed light on how these factors could promote or…

Populations and Evolution · Quantitative Biology 2026-04-01 Isaac Planas-Sitjà , Ryosuke Iritani , Adam L. Cronin

In this study, we performed comprehensive morphological investigations of the spontaneous formations of effective network structures among elements in coupled logistic maps, specifically with a delayed connection change. Our proposed model…

Adaptation and Self-Organizing Systems · Physics 2020-12-02 Amika Ohara , Masashi Fujii , Akinori Awazu

The original Hardenberg's model of biomass patterns in arid and semi-arid regions is revisited to extend it to more general non flat regions. It is proposed a technique to study these more generalized (non-flat) regions using both a…

Populations and Evolution · Quantitative Biology 2019-03-19 Rubén Martínez D , Andrea Montiel P. , J. F. Rojas

Biological systems often consist of a small number of constituents and are therefore inherently noisy. To function effectively, these systems must employ mechanisms to constrain the accumulation of noise. Such mechanisms have been…

Statistical Mechanics · Physics 2024-09-04 Felix J. Meigel , Steffen Rulands

Complex networks have become the main paradigm for modelling the dynamics of interacting systems. However, networks are intrinsically limited to describing pairwise interactions, whereas real-world systems are often characterized by…

Many recent studies of liquid-liquid phase separation in biology focus on phase separation as a dynamic control mechanism for cellular function, but it can also result in complex mesoscopic structures. We primarily investigate a model…

Soft Condensed Matter · Physics 2023-07-11 Sam Wilken , Aria Chaderjian , Omar A. Saleh

Patterns in a semiarid ecosystem are important because they directly and indirectly affect ecological processes, biodiversity, and ecosystem resilience. Understanding the causes and effects of these patterns is critical for long-term land…

Populations and Evolution · Quantitative Biology 2023-12-05 Swadesh Pal , Malay Banerjee , Roderick Melnik

Assembly theory predicts that a distinguishing signature of life is its ability to produce complex molecules in abundance, opening new possibilities for life detection. Experimental validation of this approach has so far relied on abiotic…

Biological Physics · Physics 2025-09-08 Alexandre Champagne-Ruel , Christopher P. Kempes , Cole Mathis

The onset of life is often framed around membrane bound compartments and encoded metabolism, leaving unresolved how spatial organization arose before stable boundaries. In this context, environmental gradients are usually treated as…

Other Quantitative Biology · Quantitative Biology 2026-04-23 Arturo Tozzi