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There has been much recent, exciting work on combining the complementary strengths of latent variable models and deep learning. Latent variable modeling makes it easy to explicitly specify model constraints through conditional independence…

Computation and Language · Computer Science 2019-08-06 Yoon Kim , Sam Wiseman , Alexander M. Rush

This paper presents the foundation for a decomposition theory for Boolean networks, a type of discrete dynamical system that has found a wide range of applications in the life sciences, engineering, and physics. Given a Boolean network…

Dynamical Systems · Mathematics 2022-06-10 Claus Kadelka , Reinhard Laubenbacher , David Murrugarra , Alan Veliz-Cuba , Matthew Wheeler

Weight space learning aims to extract information about a neural network, such as its training dataset or generalization error. Recent approaches learn directly from model weights, but this presents many challenges as weights are…

Machine Learning · Computer Science 2025-10-23 Jonathan Kahana , Eliahu Horwitz , Imri Shuval , Yedid Hoshen

Artificial Intelligence algorithms have been steadily increasing in popularity and usage. Deep Learning, allows neural networks to be trained using huge datasets and also removes the need for human extracted features, as it automates the…

Neural and Evolutionary Computing · Computer Science 2020-05-11 Vasco Lopes , Paulo Fazendeiro

Neural network based data-driven operator learning schemes have shown tremendous potential in computational mechanics. DeepONet is one such neural network architecture which has gained widespread appreciation owing to its excellent…

Machine Learning · Statistics 2022-06-14 Shailesh Garg , Souvik Chakraborty

Continual Learning is a learning paradigm where learning systems are trained with sequential or streaming tasks. Two notable directions among the recent advances in continual learning with neural networks are ($i$) variational Bayes based…

Machine Learning · Computer Science 2020-02-24 Abhishek Kumar , Sunabha Chatterjee , Piyush Rai

The gene networks that comprise the circadian clock modulate biological function across a range of scales, from gene expression to performance and adaptive behaviour. The clock functions by generating endogenous rhythms that can be…

Molecular Networks · Quantitative Biology 2012-10-25 Ozgur Akman , Steven Watterson , Andrew Parton , Nigel Binns , Andrew Millar , Peter Ghazal

Regression models are used for inference and prediction in a wide range of applications providing a powerful scientific tool for researchers and analysts from different fields. In many research fields the amount of available data as well as…

Methodology · Statistics 2018-06-08 Aliaksandr Hubin , Geir Storvik , Florian Frommlet

Computation is currently seen as a forward propagator that evolves (retards) a completely defined initial vector into a corresponding final vector. Initial and final vectors map the (logical) input and output of a reversible Boolean network…

Quantum Physics · Physics 2009-10-30 Giuseppe Castagnoli

Recent successes in language modeling, notably with deep learning methods, coincide with a shift from probabilistic to weighted representations. We raise here the question of the importance of this evolution, in the light of the practical…

Other Quantitative Biology · Quantitative Biology 2019-08-05 François Coste

Bayesian networks provide an elegant formalism for representing and reasoning about uncertainty using probability theory. Theyare a probabilistic extension of propositional logic and, hence, inherit some of the limitations of propositional…

Artificial Intelligence · Computer Science 2007-05-23 Kristian Kersting , Luc De Raedt

Modern deep learning models generalize remarkably well in-distribution, despite being overparametrized and trained with little to no explicit regularization. Instead, current theory credits implicit regularization imposed by the choice of…

Machine Learning · Computer Science 2026-03-17 Jonathan Wenger , Beau Coker , Juraj Marusic , John P. Cunningham

We develop Boolean-valued domain theory and show how the lambda-calculus can be interpreted in using domain-valued random variables. We focus on the reflexive domain construction rather than the language and its semantics. The notion of…

Logic in Computer Science · Computer Science 2026-01-06 Robert Furber , Radu Mardare , Prakash Panangaden , Dana Scott

Learning and logic are distinct and remarkable approaches to prediction. Machine learning has experienced a surge in popularity because it is robust to noise and achieves high performance; however, ML experiences many issues with knowledge…

Artificial Intelligence · Computer Science 2018-07-16 Jeffrey Cheng

We present a general framework for training deep neural networks without backpropagation. This substantially decreases training time and also allows for construction of deep networks with many sorts of learners, including networks whose…

Machine Learning · Statistics 2017-06-09 Chris Hettinger , Tanner Christensen , Ben Ehlert , Jeffrey Humpherys , Tyler Jarvis , Sean Wade

To model biological systems using networks, it is desirable to allow more than two levels of expression for the nodes and to allow the introduction of parameters. Various modeling and simulation methods addressing these needs using Boolean…

Molecular Networks · Quantitative Biology 2014-04-23 Yi Ming Zou

Bayesian neural networks (BNNs) have recently regained a significant amount of attention in the deep learning community due to the development of scalable approximate Bayesian inference techniques. There are several advantages of using a…

Machine Learning · Statistics 2023-05-02 Aliaksandr Hubin , Geir Storvik

Dynamical systems theory and complexity science provide powerful tools for analysing artificial agents and robots. Furthermore, they have been recently proposed also as a source of design principles and guidelines. Boolean networks are a…

Artificial Intelligence · Computer Science 2015-03-18 Andrea Roli , Mattia Manfroni , Carlo Pinciroli , Mauro Birattari

We challenge the longstanding assumption that the mean-field approximation for variational inference in Bayesian neural networks is severely restrictive, and show this is not the case in deep networks. We prove several results indicating…

Machine Learning · Computer Science 2021-03-11 Sebastian Farquhar , Lewis Smith , Yarin Gal

A logical function can be used to characterizing a property of a state of Boolean network (BN), which is considered as an aggregation of states. To illustrate the dynamics of a set of logical functions, which characterize our concerned…

Systems and Control · Electrical Eng. & Systems 2021-04-20 Daizhan Cheng , Lijun Zhang , Dongyao Bi
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