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Normalization and outlier detection belong to the preprocessing of gene expression data. We propose a natural normalization procedure based on statistical data depth which normalizes to the distribution of gene expressions of the most…

Methodology · Statistics 2022-06-29 Alicia Nieto-Reyes , Javier Cabrera

We consider functional outlier detection from a geometric perspective, specifically: for functional data sets drawn from a functional manifold which is defined by the data's modes of variation in amplitude and phase. Based on this manifold,…

Machine Learning · Statistics 2021-09-15 Moritz Herrmann , Fabian Scheipl

The computation of the Tukey depth, also called halfspace depth, is very demanding, even in low dimensional spaces, because it requires the consideration of all possible one-dimensional projections. In this paper we propose a random depth…

Computation · Statistics 2007-07-03 J. A. Cuesta-Albertos , A. Nieto-Reyes

The concept of depth represents methods to measure how deep an arbitrary point is positioned in a dataset and can be seen as the opposite of outlyingness. It has proved very useful and a wide range of methods have been developed based on…

Methodology · Statistics 2020-01-09 Hugo Lewi Hammer , Anis Yazidi , Håvard Rue

The direction of outlyingness is crucial to describing the centrality of multivariate functional data. Motivated by this idea, we generalize classical depth to directional outlyingness for functional data. We investigate theoretical…

Methodology · Statistics 2018-04-24 Wenlin Dai , Marc G. Genton

The classification of multivariate functional data is an important task in scientific research. Unlike point-wise data, functional data are usually classified by their shapes rather than by their scales. We define an outlyingness matrix by…

Methodology · Statistics 2018-04-24 Wenlin Dai , Marc G. Genton

Two frameworks for multivariate functional depth based on multivariate depths are introduced in this paper. The first framework is multivariate functional integrated depth, and the second framework involves multivariate functional extremal…

Methodology · Statistics 2022-11-29 Zhuo Qu , Wenlin Dai , Marc G. Genton

Data depth is a concept in multivariate statistics that measures the centrality of a point in a given data cloud in $\IR^d$. If the depth of a point can be represented as the minimum of the depths with respect to all one-dimensional…

Computation · Statistics 2020-07-17 Rainer Dyckerhoff , Pavlo Mozharovskyi , Stanislav Nagy

In recent years, manifold methods have moved into focus as tools for dimension reduction. Assuming that the high-dimensional data actually lie on or close to a low-dimensional nonlinear manifold, these methods have shown convincing results…

Machine Learning · Statistics 2020-12-23 Moritz Herrmann , Fabian Scheipl

Tukey depth, aka halfspace depth, has attracted much interest in data analysis, because it is a natural way of measuring the notion of depth relative to a cloud of points or, more generally, to a probability measure. Given an i.i.d. sample,…

Statistics Theory · Mathematics 2017-02-10 Victor-Emmanuel Brunel

We present a new algorithm for Tukey (halfspace) depth level sets and its implementation. Given $d$-dimensional data set for any $d\geq 2$, the algorithm is based on representation of level sets as intersections of balls in $R^d$, and can…

Computational Geometry · Computer Science 2016-11-16 Milica Bogicevic , Milan Merkle

The halfspace depth is a prominent tool of nonparametric multivariate analysis. The upper level sets of the depth, termed the trimmed regions of a measure, serve as a natural generalization of the quantiles and inter-quantile regions to…

Statistics Theory · Mathematics 2022-09-26 Petra Laketa , Stanislav Nagy

In functional data analysis (FDA), covariance function is fundamental not only as a critical quantity for understanding elementary aspects of functional data but also as an indispensable ingredient for many advanced FDA methods. This paper…

Methodology · Statistics 2017-01-24 Raymond K. W. Wong , Xiaoke Zhang

We present a new fast approximate algorithm for Tukey (halfspace) depth level sets and its implementation-ABCDepth. Given a $d$-dimensional data set for any $d\geq 1$, the algorithm is based on a representation of level sets as…

Data Structures and Algorithms · Computer Science 2018-12-11 Milica Bogićević , Milan Merkle

We propose a new family of depth measures called the elastic depths that can be used to greatly improve shape anomaly detection in functional data. Shape anomalies are functions that have considerably different geometric forms or features…

Methodology · Statistics 2020-08-21 Trevor Harris , James Derek Tucker , Bo Li , Lyndsay Shand

Classical multivariate statistics measures the outlyingness of a point by its Mahalanobis distance from the mean, which is based on the mean and the covariance matrix of the data. A multivariate depth function is a function which, given a…

Methodology · Statistics 2021-05-06 Karl Mosler , Pavlo Mozharovskyi

Task-based functional magnetic resonance imaging (task fMRI) is a non-invasive technique that allows identifying brain regions whose activity changes when individuals are asked to perform a given task. This contributes to the understanding…

Starting with Tukey's pioneering work in the 1970's, the notion of depth in statistics has been widely extended especially in the last decade. These extensions include high dimensional data, functional data, and manifold-valued data. In…

Statistics Theory · Mathematics 2020-11-24 Alejandro Cholaquidis , Ricardo Fraiman , Fabrice Gamboa , Leonardo Moreno

This paper proposes methods to detect outliers in functional data sets and the task of identifying atypical curves is carried out using the recently proposed kernelized functional spatial depth (KFSD). KFSD is a local depth that can be used…

Methodology · Statistics 2015-06-17 Carlo Sguera , Pedro Galeano , Rosa Lillo

The concept of data depth in non-parametric multivariate descriptive statistics is the generalization of the univariate rank method to multivariate data. Halfspace depth is a measure of data depth. Given a set S of points and a point p, the…

Computational Geometry · Computer Science 2007-05-23 Dan Chen