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Many current challenges involve understanding the complex dynamical interplay between the constituents of systems. Typically, the number of such constituents is high, but only limited data sources on them are available. Conventional…

Populations and Evolution · Quantitative Biology 2021-12-17 Jana C. Massing , Thilo Gross

We introduce a new nonlinear model for classification, in which we model the joint distribution of response variable, y, and covariates, x, non-parametrically using Dirichlet process mixtures. We keep the relationship between y and x linear…

Statistics Theory · Mathematics 2007-05-23 Babak Shahbaba , Radford M. Neal

Diversity measurement underpins the study of biological systems, but measures used vary across disciplines. Despite their common use and broad utility, no unified framework has emerged for measuring, comparing and partitioning diversity.…

Quantitative Methods · Quantitative Biology 2016-12-09 Richard Reeve , Tom Leinster , Christina A. Cobbold , Jill Thompson , Neil Brummitt , Sonia N. Mitchell , Louise Matthews

Poaching poses significant threats to wildlife and biodiversity. A valuable step in reducing poaching is to forecast poacher behavior, which can inform patrol planning and other conservation interventions. Existing poaching prediction…

Machine Learning · Computer Science 2025-08-29 Lingkai Kong , Haichuan Wang , Charles A. Emogor , Vincent Börsch-Supan , Lily Xu , Milind Tambe

Understanding the pattern formation in communities has been at the center of attention in various fields. Here we introduce a novel model, called an "information-particle model," which is based on the reaction-diffusion model and the…

Physics and Society · Physics 2023-07-21 Junichi Miyakoshi

The global population increase leads to a high food demand, and to reach this target products such as pesticides are needed to protect the crops. Research is focusing on the development of new products that can be less harmful to the…

Quantitative Methods · Quantitative Biology 2025-02-13 Enrico Sangoi , Federica Cattani , Faheem Padia , Federico Galvanin

Biogeographical regions (geographically distinct assemblages of species and communities) constitute a cornerstone for ecology, biogeography, evolution and conservation biology. Species turnover measures are often used to quantify…

Quantitative Methods · Quantitative Biology 2015-08-19 Daril A. Vilhena , Alexandre Antonelli

Point processes often have a natural interpretation with respect to a continuous process. We propose a point process construction that describes arrival time observations in terms of the state of a latent diffusion process. In this…

Computation · Statistics 2023-06-02 Ali Hasan , Yu Chen , Yuting Ng , Mohamed Abdelghani , Anderson Schneider , Vahid Tarokh

Comparative and evolutive ecologists are interested in the distribution of quantitative traits among related species. The classical framework for these distributions consists of a random process running along the branches of a phylogenetic…

Applications · Statistics 2017-08-24 Paul Bastide , Mahendra Mariadassou , Stéphane Robin

To successfully manage marine fisheries using an ecosystem-based approach, long-term predictions of fish stock development considering changing environmental conditions are necessary. Such predictions can be provided by end-to-end ecosystem…

Populations and Evolution · Quantitative Biology 2022-10-04 Arne N. Johanson , Andreas Oschlies , Wilhelm Hasselbring , Wilhelm Hasselbring , Boris Worm

Temporal point processes are the dominant paradigm for modeling sequences of events happening at irregular intervals. The standard way of learning in such models is by estimating the conditional intensity function. However, parameterizing…

Machine Learning · Computer Science 2020-01-24 Oleksandr Shchur , Marin Biloš , Stephan Günnemann

Optimal design facilitates intelligent data collection. In this paper, we introduce a fully Bayesian design approach for spatial processes with complex covariance structures, like those typically exhibited in natural ecosystems. Coordinate…

Species distribution models (SDMs) are widely used to predict species' geographic distributions, serving as critical tools for ecological research and conservation planning. Typically, SDMs relate species occurrences to environmental…

Machine Learning · Computer Science 2025-08-12 Hager Radi Abdelwahed , Mélisande Teng , Robin Zbinden , Laura Pollock , Hugo Larochelle , Devis Tuia , David Rolnick

The dramatic increase of observational data across industries provides unparalleled opportunities for data-driven decision making and management, including the manufacturing industry. In the context of production, data-driven approaches can…

Optimization and Control · Mathematics 2018-01-09 Najibesadat Sadati , Ratna Babu Chinnam , Milad Zafar Nezhad

A frequent challenge encountered with compositional ecological data is how to interpret and model data with a high proportion of zeros and $N$'s. Such data frequently occur in ecological applications where counts of species are collected…

Methodology · Statistics 2025-08-04 James Sweeney , John Haslett , Dipankar Bandyopadhyay , Michael Fop , Andrew C. Parnell

Understanding the spatial distribution of animals, during all their life phases, as well as how the distributions are influenced by environmental covariates, is a fundamental requirement for the effective management of animal populations.…

Applications · Statistics 2020-10-26 Soraia Pereira , Raquel Menezes , Maria Manuel Angélico , Tiago Marques

Prediction polling is an increasingly popular form of crowdsourcing in which multiple participants estimate the probability or magnitude of some future event. These estimates are then aggregated into a single forecast. Historically,…

Methodology · Statistics 2016-04-25 Ville A. Satopää , Shane T. Jensen , Robin Pemantle , Lyle H. Ungar

Mathematical modelling and numerical simulations of interaction populations are crucial topics in systems biology. The interactions of ecological models may occur among individuals of the same species or individuals of different species.…

Quantitative Methods · Quantitative Biology 2017-09-04 Sarbaz H. A. Khoshnaw

Mixture models are one of the most widely used statistical tools when dealing with data from heterogeneous populations. This paper considers the long-standing debate over finite mixture and infinite mixtures and brings the two modelling…

Methodology · Statistics 2019-04-23 Raffaele Argiento , Maria De Iorio

While the design of automated knowledge-based sensor scheduling is relevant to many multi-target detection and tracking problems, tracking algorithms are rarely built for this purpose and their outputs provide little flexibility for the…

Applications · Statistics 2016-07-13 Emmanuel Delande , Jeremie Houssineau , Daniel E. Clark
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