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A great deal of research has been devoted on the investigation of neural dynamics in various network topologies. However, only a few studies have focused on the influence of autapses, synapses from a neuron onto itself via closed loops, on…

Neurons and Cognition · Quantitative Biology 2020-11-09 P. R. Protachevicz , K. C. Iarosz , I. L. Caldas , C. G. Antonopoulos , A. M. Batista , J. Kurths

Large networks of spiking neurons show abrupt changes in their collective dynamics resembling phase transitions studied in statistical physics. An example of this phenomenon is the transition from irregular, noise-driven dynamics to…

Adaptation and Self-Organizing Systems · Physics 2008-11-25 Vicenç Gómez , Andreas Kaltenbrunner , Vicente López , Hilbert J. Kappen

Recurrent neural networks (RNNs) trained on compositional tasks can exhibit functional modularity, in which neurons can be clustered by activity similarity and participation in shared computational subtasks. Unlike brains, these RNNs do not…

Neurons and Cognition · Quantitative Biology 2023-10-12 Ziming Liu , Mikail Khona , Ila R. Fiete , Max Tegmark

Neural synchrony in the brain at rest is usually variable and intermittent, thus intervals of predominantly synchronized activity are interrupted by intervals of desynchronized activity. Prior studies suggested that this temporal structure…

Quantitative Methods · Quantitative Biology 2021-04-26 Joel Zirkle , Leonid L Rubchinsky

Stroke-induced disturbances of large-scale cortical networks are known to be associated with the extent of motor deficits. We argue that identifying brain networks representative of motor behavior in the resting brain would provide…

Neurons and Cognition · Quantitative Biology 2019-07-24 Ozan Özdenizci , Timm Meyer , Felix Wichmann , Jan Peters , Bernhard Schölkopf , Müjdat Çetin , Moritz Grosse-Wentrup

Biological systems use neural circuits to integrate input information and produce outputs. Synaptic convergence, where multiple neurons converge their inputs onto a single downstream neuron, is common in natural neural circuits. However,…

Mesoscale and Nanoscale Physics · Physics 2026-02-04 Wendy Otieno , Alex Gabbitas , Debi Pattnaik , Pavel Borisov , Sergey Savel'ev , Alexander G. Balanov

We propose a design principle for the learning circuits of the biological brain. The principle states that almost any dendritic weights updated via heterosynaptic plasticity can implement a generalized and efficient class of gradient-based…

Neurons and Cognition · Quantitative Biology 2025-05-06 Liu Ziyin , Isaac Chuang , Tomaso Poggio

Bone remodeling is a complex process involving cell-cell interactions, biochemical signaling and mechanical stimuli. Early models of the biological aspects of remodeling were non-spatial and focused on the local dynamics at a fixed location…

Populations and Evolution · Quantitative Biology 2016-09-05 Marc D. Ryser , Kevin A. Murgas

Spiking Neural Networks (SNNs) have incorporated more biologically-plausible structures and learning principles, hence are playing critical roles in bridging the gap between artificial and natural neural networks. The spikes are the sparse…

Neural and Evolutionary Computing · Computer Science 2020-10-08 Xiang Cheng , Tielin Zhang , Shuncheng Jia , Bo Xu

Competition between synapses arises in some forms of correlation-based plasticity. Here we propose a game theory-inspired model of synaptic interactions whose dynamics is driven by competition between synapses in their weak and strong…

Disordered Systems and Neural Networks · Physics 2011-10-19 Ajaz Ahmad Bhat , Gaurang Mahajan , Anita Mehta

Biological nervous systems consist of networks of diverse, sophisticated information processors in the form of neurons of different classes. In most artificial neural networks (ANNs), neural computation is abstracted to an activation…

Neural and Evolutionary Computing · Computer Science 2023-06-12 Joachim Winther Pedersen , Sebastian Risi

To gain insight into the neural events responsible for visual perception of static and dynamic optical patterns, we study how neural activation spreads in arrays of inhibition-stabilized neural networks with nearest-neighbor coupling. The…

Neurons and Cognition · Quantitative Biology 2016-09-02 Sergey Savel'ev , Sergei Gepshtein

Recent experimental advances are producing an avalanche of data on both neural connectivity and neural activity. To take full advantage of these two emerging datasets we need a framework that links them, revealing how collective neural…

Neurons and Cognition · Quantitative Biology 2020-02-27 Gabriel Koch Ocker , Krešimir Josić , Eric Shea-Brown , Michael A. Buice

Recent advances in agentic AI have led to systems capable of autonomous task execution and language-based reasoning, yet their spatial reasoning abilities remain limited and underexplored, largely constrained to symbolic and sequential…

Artificial Intelligence · Computer Science 2025-09-12 Bui Duc Manh , Soumyaratna Debnath , Zetong Zhang , Shriram Damodaran , Arvind Kumar , Yueyi Zhang , Lu Mi , Erik Cambria , Lin Wang

Understanding how recurrent neural circuits can learn to implement dynamical systems is a fundamental challenge in neuroscience. The credit assignment problem, i.e. determining the local contribution of each synapse to the network's global…

Neurons and Cognition · Quantitative Biology 2017-08-08 Alireza Alemi , Christian Machens , Sophie Denève , Jean-Jacques Slotine

We introduce a model of generalized Hebbian learning and retrieval in oscillatory neural networks modeling cortical areas such as hippocampus and olfactory cortex. Recent experiments have shown that synaptic plasticity depends on spike…

Disordered Systems and Neural Networks · Physics 2007-05-23 Silvia Scarpetta , Zhaoping Li , John Hertz

The brain modifies its synaptic strengths during learning in order to better adapt to its environment. However, the underlying plasticity rules that govern learning are unknown. Many proposals have been suggested, including Hebbian…

Neurons and Cognition · Quantitative Biology 2020-12-09 Aran Nayebi , Sanjana Srivastava , Surya Ganguli , Daniel L. K. Yamins

The plasticity of the conduction delay between neurons plays a fundamental role in learning. However, the exact underlying mechanisms in the brain for this modulation is still an open problem. Understanding the precise adjustment of…

Neural and Evolutionary Computing · Computer Science 2020-11-19 Alireza Nadafian , Mohammad Ganjtabesh

The synaptic connectivity of cortical networks features an overrepresentation of certain wiring motifs compared to simple random-network models. This structure is shaped, in part, by synaptic plasticity that promotes or suppresses…

Neurons and Cognition · Quantitative Biology 2014-12-23 Gabriel Koch Ocker , Ashok Litwin-Kumar , Brent Doiron

Neural computation is associated with the emergence, reconfiguration and dissolution of cell assemblies in the context of varying oscillatory states. Here, we describe the complex spatio-temporal dynamics of cell assemblies through temporal…

Neurons and Cognition · Quantitative Biology 2020-01-20 Nicola Pedreschi , Christophe Bernard , Wesley Clawson , Pascale Quilichini , Alain Barrat , Demian Battaglia