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A graph $G$ covers a graph $H$ if there exists a locally bijective homomorphism from $G$ to $H$. We deal with regular covers where this homomorphism is prescribed by the action of a semiregular subgroup of $\textrm{Aut}(G)$. We study…
We give an analog of the Myhill-Nerode methods from formal language theory for hypergraphs and use it to derive the following results for two NP-hard hypergraph problems: * We provide an algorithm for testing whether a hypergraph has…
We consider the NP-hard Tree Containment problem that has important applications in phylogenetics. The problem asks if a given leaf-labeled network contains a subdivision of a given leaf-labeled tree. We develop a fast algorithm for the…
The bidimensionality of a set of vertices $X$ in a graph $G$ is the maximum $k$ for which $G$ contains as a $X$-rooted minor the $(k \times k)$-grid. This notion allows for the following version of the Graph Minors Structure Theorem (GMST)…
The Subtree Isomorphism problem asks whether a given tree is contained in another given tree. The problem is of fundamental importance and has been studied since the 1960s. For some variants, e.g., ordered trees, near-linear time algorithms…
We introduce a series of graph decompositions based on the modulator/target scheme of modification problems that enable several algorithmic applications that parametrically extend the algorithmic potential of planarity. In the core of our…
The general communication tree embedding problem is the problem of mapping a set of communicating terminals, represented by a graph G, into the set of vertices of some physical network represented by a tree T. In the case where the vertices…
In line with the recent development in topological graph theory, we are considering undirected graphs that are allowed to contain {\em multiple edges}, {\em loops}, and {\em semi-edges}. A graph is called {\em simple} if it contains no…
A natural way of increasing our understanding of NP-complete graph problems is to restrict the input to a special graph class. Classes of $H$-free graphs, that is, graphs that do not contain some graph $H$ as an induced subgraph, have…
Reachability and shortest path problems are NL-complete for general graphs. They are known to be in L for graphs of tree-width 2 [JT07]. However, for graphs of tree-width larger than 2, no bound better than NL is known. In this paper, we…
Temporal graphs are a special class of graphs for which a temporal component is added to edges, that is, each edge possesses a set of times at which it is available and can be traversed. Many classical problems on graphs can be translated…
According to the classic Chv{\'{a}}tal's Lemma from 1977, a graph of minimum degree $\delta(G)$ contains every tree on $\delta(G)+1$ vertices. Our main result is the following algorithmic "extension" of Chv\'{a}tal's Lemma: For any…
We consider the problem of finding a Hamiltonian path or a Hamiltonian cycle with precedence constraints in the form of a partial order on the vertex set. We show that the path problem is $\mathsf{NP}$-complete for graphs of pathwidth 4…
We consider the following problem for a fixed graph H: given a graph G and two H-colorings of G, i.e. homomorphisms from G to H, can one be transformed (reconfigured) into the other by changing one color at a time, maintaining an H-coloring…
In this paper we study a scheduling problem arising from executing numerical simulations on HPC architectures. With a constant number of parallel machines, the objective is to minimize the makespan under memory constraints for the machines.…
A graph $G$ is said to be a `set graph' if it admits an acyclic orientation that is also `extensional', in the sense that the out-neighborhoods of its vertices are pairwise distinct. Equivalently, a set graph is the underlying graph of the…
Phylogenetic networks are a generalization of phylogenetic trees to leaf-labeled directed acyclic graphs that represent ancestral relationships between species whose past includes non-tree-like events such as hybridization and horizontal…
Given a graph $G(V,E)$, a vertex subset $S$ of $G$ is called an open packing in $G$ if no pair of distinct vertices in $S$ have a common neighbour in $G$. The size of a largest open packing in $G$ is called the open packing number,…
An elimination tree of a connected graph $G$ is a rooted tree on the vertices of $G$ obtained by choosing a root $v$ and recursing on the connected components of $G-v$ to obtain the subtrees of $v$. The graph associahedron of $G$ is a…
Permutation Pattern Matching (PPM) is the problem of deciding for a given pair of permutations P and T whether the pattern P is contained in the text T. Bose, Buss and Lubiw showed that PPM is NP-complete. In view of this result, it is…