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Large language models (LLMs) hold great promise in summarizing medical evidence. Most recent studies focus on the application of proprietary LLMs. Using proprietary LLMs introduces multiple risk factors, including a lack of transparency and…

The paper introduces a framework for the evaluation of the encoding of factual scientific knowledge, designed to streamline the manual evaluation process typically conducted by domain experts. Inferring over and extracting information from…

Computation and Language · Computer Science 2024-10-21 Magdalena Wysocka , Oskar Wysocki , Maxime Delmas , Vincent Mutel , Andre Freitas

Data science plays a critical role in biomedical research, but it requires professionals with expertise in coding and medical data analysis. Large language models (LLMs) have shown great potential in supporting medical tasks and performing…

Artificial Intelligence · Computer Science 2025-04-10 Zifeng Wang , Benjamin Danek , Ziwei Yang , Zheng Chen , Jimeng Sun

Software documentation is essential for program comprehension, developer onboarding, code review, and long-term maintenance. Yet producing quality documentation manually is time-consuming and frequently yields incomplete or inconsistent…

Software Engineering · Computer Science 2026-04-20 Afia Farjana , Zaiyu Cheng , Antonio Mastropaolo

This paper introduces AutoSurvey, a speedy and well-organized methodology for automating the creation of comprehensive literature surveys in rapidly evolving fields like artificial intelligence. Traditional survey paper creation faces…

Information Retrieval · Computer Science 2024-06-19 Yidong Wang , Qi Guo , Wenjin Yao , Hongbo Zhang , Xin Zhang , Zhen Wu , Meishan Zhang , Xinyu Dai , Min Zhang , Qingsong Wen , Wei Ye , Shikun Zhang , Yue Zhang

This research pioneers the use of fine-tuned Large Language Models (LLMs) to automate Systematic Literature Reviews (SLRs), presenting a significant and novel contribution in integrating AI to enhance academic research methodologies. Our…

Computation and Language · Computer Science 2025-02-21 Teo Susnjak , Peter Hwang , Napoleon H. Reyes , Andre L. C. Barczak , Timothy R. McIntosh , Surangika Ranathunga

This paper presents novel prompting techniques to improve the performance of automatic summarization systems for scientific articles. Scientific article summarization is highly challenging due to the length and complexity of these…

Computation and Language · Computer Science 2023-12-18 Aldan Creo , Manuel Lama , Juan C. Vidal

Systematic reviews are crucial for evidence-based medicine as they comprehensively analyse published research findings on specific questions. Conducting such reviews is often resource- and time-intensive, especially in the screening phase,…

Information Retrieval · Computer Science 2024-02-02 Shuai Wang , Harrisen Scells , Shengyao Zhuang , Martin Potthast , Bevan Koopman , Guido Zuccon

Systematic reviews are comprehensive literature reviews that address highly focused research questions and represent the highest form of evidence in medicine. A critical step in this process is the development of complex Boolean queries to…

Information Retrieval · Computer Science 2025-06-03 Shuai Wang , Harrisen Scells , Bevan Koopman , Guido Zuccon

Online reviews play a pivotal role in influencing consumer decisions across various domains, from purchasing products to selecting hotels or restaurants. However, the sheer volume of reviews -- often containing repetitive or irrelevant…

Computation and Language · Computer Science 2024-10-18 Mir Tafseer Nayeem , Davood Rafiei

Large Language Models (LLMs) have spurred interest in automatic evaluation methods for summarization, offering a faster, more cost-effective alternative to human evaluation. However, existing methods often fall short when applied to complex…

Computation and Language · Computer Science 2024-09-18 Ziwei Gong , Lin Ai , Harshsaiprasad Deshpande , Alexander Johnson , Emmy Phung , Zehui Wu , Ahmad Emami , Julia Hirschberg

This study applies Large Language Models (LLMs) to two foundational Electronic Health Record (EHR) data science tasks: structured data querying (using programmatic languages, Python/Pandas) and information extraction from unstructured…

Computation and Language · Computer Science 2026-01-29 Juan Jose Rubio Jan , Jack Wu , Julia Ive

Literature research, vital for scientific work, faces the challenge of surging information volumes exceeding researchers' processing capabilities. We present an automated review generation method based on large language models (LLMs) to…

Computation and Language · Computer Science 2025-05-02 Shican Wu , Xiao Ma , Dehui Luo , Lulu Li , Xiangcheng Shi , Xin Chang , Xiaoyun Lin , Ran Luo , Chunlei Pei , Changying Du , Zhi-Jian Zhao , Jinlong Gong

Medical systematic reviews play a vital role in healthcare decision making and policy. However, their production is time-consuming, limiting the availability of high-quality and up-to-date evidence summaries. Recent advancements in large…

Computation and Language · Computer Science 2023-10-19 Hye Sun Yun , Iain J. Marshall , Thomas A. Trikalinos , Byron C. Wallace

Personalization, the ability to tailor a system to individual users, is an essential factor in user experience with natural language processing (NLP) systems. With the emergence of Large Language Models (LLMs), a key question is how to…

Computation and Language · Computer Science 2023-11-01 Chris Richardson , Yao Zhang , Kellen Gillespie , Sudipta Kar , Arshdeep Singh , Zeynab Raeesy , Omar Zia Khan , Abhinav Sethy

Recent studies have found that summaries generated by large language models (LLMs) are favored by human annotators over the original reference summaries in commonly used summarization datasets. Therefore, we study an LLM-as-reference…

Computation and Language · Computer Science 2024-07-19 Yixin Liu , Kejian Shi , Katherine S He , Longtian Ye , Alexander R. Fabbri , Pengfei Liu , Dragomir Radev , Arman Cohan

Summarizing software artifacts is an important task that has been thoroughly researched. For evaluating software summarization approaches, human judgment is still the most trusted evaluation. However, it is time-consuming and fatiguing for…

Software Engineering · Computer Science 2024-09-04 Abhishek Kumar , Sonia Haiduc , Partha Pratim Das , Partha Pratim Chakrabarti

Research on long non-coding RNAs (lncRNAs) has garnered significant attention due to their critical roles in gene regulation and disease mechanisms. However, the complexity and diversity of lncRNA sequences, along with the limited knowledge…

Genomics · Quantitative Biology 2024-11-07 Wei Wang , Zhichao Hou , Xiaorui Liu , Xinxia Peng

We study the efficacy of fine-tuning Large Language Models (LLMs) for the specific task of report (government archives, news, intelligence reports) summarization. While this topic is being very actively researched - our specific application…

With the rapid advancement of Natural Language Processing in recent years, numerous studies have shown that generic summaries generated by Large Language Models (LLMs) can sometimes surpass those annotated by experts, such as journalists,…

Computation and Language · Computer Science 2024-10-08 Lemei Zhang , Peng Liu , Marcus Tiedemann Oekland Henriksboe , Even W. Lauvrak , Jon Atle Gulla , Heri Ramampiaro