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Predicting the ground-state 3D molecular conformations from 2D molecular graphs is critical in computational chemistry due to its profound impact on molecular properties. Deep learning (DL) approaches have recently emerged as promising…

Chemical Physics · Physics 2024-10-22 Taewon Kim , Hyunjin Seo , Sungsoo Ahn , Eunho Yang

This paper presents a dynamic network rewiring (DNR) method to generate pruned deep neural network (DNN) models that are robust against adversarial attacks yet maintain high accuracy on clean images. In particular, the disclosed DNR method…

Computer Vision and Pattern Recognition · Computer Science 2020-11-25 Souvik Kundu , Mahdi Nazemi , Peter A. Beerel , Massoud Pedram

Coarse-graining (CG) enables molecular dynamics (MD) simulations of larger systems and longer timescales that are otherwise infeasible with atomistic models. Machine learning potentials (MLPs), with their capacity to capture many-body…

Chemical Physics · Physics 2025-12-01 Weilong Chen , Franz Görlich , Paul Fuchs , Julija Zavadlav

The simulation of microcirculatory blood flow in realistic vascular architectures poses significant challenges due to the multiscale nature of the problem and the topological complexity of capillary networks. In this work, we propose a…

Numerical Analysis · Mathematics 2025-12-12 Paolo Botta , Piermario Vitullo , Thomas Ventimiglia , Andreas Linninger , Paolo Zunino

Deep neural networks (DNNs) have achieved significant success in a variety of real world applications, i.e., image classification. However, tons of parameters in the networks restrict the efficiency of neural networks due to the large model…

Machine Learning · Computer Science 2019-08-21 Yuzhe Ma , Ran Chen , Wei Li , Fanhua Shang , Wenjian Yu , Minsik Cho , Bei Yu

We develop a machine-learning method for coarse-graining condensed-phase molecular systems using anisotropic particles. The method extends currently available high-dimensional neural network potentials by addressing molecular anisotropy. We…

Statistical Mechanics · Physics 2023-07-12 Marltan O. Wilson , David M. Huang

Coarse-grained (CG) force field methods for molecular systems are a crucial tool to simulate large biological macromolecules and are therefore essential for characterisations of biomolecular systems. While state-of-the-art deep learning…

Graph Neural Networks (GNNs) are the go-to model for graph data analysis. However, GNNs rely on two key operations - aggregation and update, which can pose challenges for low-latency inference tasks or resource-constrained scenarios. Simple…

Machine Learning · Computer Science 2026-01-14 Amir Eskandari , Aman Anand , Elyas Rashno , Farhana Zulkernine

Efficiently predicting the flowfield and load in aerodynamic shape optimisation remains a highly challenging and relevant task. Deep learning methods have been of particular interest for such problems, due to their success for solving…

Fluid Dynamics · Physics 2021-06-16 Li-Wei Chen , Berkay Alp Cakal , Xiangyu Hu , Nils Thuerey

The emerging task of fine-grained image classification in low-data regimes assumes the presence of low inter-class variance and large intra-class variation along with a highly limited amount of training samples per class. However,…

Computer Vision and Pattern Recognition · Computer Science 2024-07-01 Dmitry Demidov , Abduragim Shtanchaev , Mihail Mihaylov , Mohammad Almansoori

Model compression is an essential technique for deploying deep neural networks (DNNs) on power and memory-constrained resources. However, existing model-compression methods often rely on human expertise and focus on parameters' local…

Computer Vision and Pattern Recognition · Computer Science 2022-07-04 Sixing Yu , Arya Mazaheri , Ali Jannesari

Recently, the applications of deep neural network (DNN) have been very prominent in many fields such as computer vision (CV) and natural language processing (NLP) due to its superior feature extraction performance. However, the…

Machine Learning · Computer Science 2022-01-11 Tao Niu , Yinglei Teng , Zhu Han , Panpan Zou

Physics perception very often faces the problem that only limited data or partial measurements on the scene are available. In this work, we propose a strategy to learn the full state of sloshing liquids from measurements of the free…

Computer Vision and Pattern Recognition · Computer Science 2022-02-25 Beatriz Moya , Alberto Badias , David Gonzalez , Francisco Chinesta , Elias Cueto

Graph neural networks (GNNs) have demonstrated superior performance in collaborative recommendation through their ability to conduct high-order representation smoothing, effectively capturing structural information within users' interaction…

Information Retrieval · Computer Science 2025-05-29 Guoxuan Chen , Lianghao Xia , Chao Huang

We propose a deep neural network (DNN) based least distance (LD) estimator (DNN-LD) for a multivariate regression problem, addressing the limitations of the conventional methods. Due to the flexibility of a DNN structure, both linear and…

Methodology · Statistics 2024-01-09 Jungmin Shin , Seung Jun Shin , Sungwan Bang

Deep convolutional neural networks (CNNs) have brought breakthroughs in processing clinical electrocardiograms (ECGs), speaker-independent speech and complex images. However, typical CNNs require a fixed input size while it is common to…

Machine Learning · Computer Science 2022-10-07 Linpeng Jin

State-of-the-art deep learning models have been extensively utilized to reconstruct small-scale structures from coarse-grained data in turbulent flows. However, their application has predominantly been restricted to structured uniform…

Fluid Dynamics · Physics 2026-03-03 Priyabrat Dash , Konduri Aditya , Christos E. Frouzakis , Mathis Bode

Pressure and flow estimation in Water Distribution Networks (WDN) allows water management companies to optimize their control operations. For many years, mathematical simulation tools have been the most common approach to reconstructing an…

Machine Learning · Computer Science 2024-07-11 Huy Truong , Andrés Tello , Alexander Lazovik , Victoria Degeler

Conjugated organic molecules play a central role in a wide range of optoelectronic devices, including organic light-emitting diodes, organic field-effect transistors, and organic solar cells. A major bottleneck in the computational design…

We present a novel deep learning approach to approximate the solution of large, sparse, symmetric, positive-definite linear systems of equations. These systems arise from many problems in applied science, e.g., in numerical methods for…

Machine Learning · Computer Science 2022-10-04 Ayano Kaneda , Osman Akar , Jingyu Chen , Victoria Kala , David Hyde , Joseph Teran