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DNA-based storage is an emerging storage technology that provides high information density and long duration. Due to the physical constraints in the reading and writing processes, error correction in DNA storage poses several interesting…

Information Theory · Computer Science 2023-10-04 Jin Sima , Netanel Raviv , Moshe Schwartz , Jehoshua Bruck

DNA is an attractive medium for digital data storage. When data is stored on DNA, errors occur, which makes error-correcting coding techniques critical for reliable DNA data storage. To reduce the errors, a common technique is to include…

Information Theory · Computer Science 2024-06-27 Franziska Weindel , Andreas L. Gimpel , Robert N. Grass , Reinhard Heckel

DNA strands serve as a storage medium for $4$-ary data over the alphabet $\{A,T,G,C\}$. DNA data storage promises formidable information density, long-term durability, and ease of replicability. However, information in this intriguing…

Information Theory · Computer Science 2024-08-06 Canberk İrimağzı , Yusuf Uslan , Ahmed Hareedy

Over the past years, the ever-growing trend on data storage demand, more specifically for "cold" data (i.e. rarely accessed), has motivated research for alternative systems of data storage. Because of its biochemical characteristics,…

Image and Video Processing · Electrical Eng. & Systems 2023-05-11 Xavier Pic , Eva Gil San Antonio , Melpomeni Dimopoulou , Marc Antonini

We propose deep learning based communication methods for adaptive-bandwidth transmission of images over wireless channels. We consider the scenario in which images are transmitted progressively in layers over time or frequency, and such…

Information Theory · Computer Science 2021-06-15 David Burth Kurka , Deniz Gündüz

In this paper, we study error-correcting codes for the storage of data in synthetic deoxyribonucleic acid (DNA). We investigate a storage model where data is represented by an unordered set of $M$ sequences, each of length $L$. Errors…

Information Theory · Computer Science 2018-05-10 Andreas Lenz , Paul H. Siegel , Antonia Wachter-Zeh , Eitan Yaakobi

In recent years, numerous data-intensive broadcasting applications have emerged at the wireless edge, calling for a flexible tradeoff between distortion, transmission rate, and processing complexity. While deep learning-based joint…

Information Theory · Computer Science 2026-03-24 Zijun Qin , Jingxuan Huang , Zesong Fei , Haichuan Ding , Yulin Shao , Xianhao Chen

Deep joint source-channel coding (DeepJSCC) has emerged as a powerful paradigm for end-to-end semantic communications, jointly learning to compress and protect task-relevant features over noisy channels. However, existing DeepJSCC schemes…

Over the past years, the ever-growing trend on data storage demand, more specifically for "cold" data (i.e. rarely accessed), has motivated research for alternative systems of data storage. Because of its biochemical characteristics,…

Image and Video Processing · Electrical Eng. & Systems 2023-09-15 Xavier Pic , Melpomeni Dimopoulou , Eva Gil San Antonio , Marc Antonini

We introduce deep learning based communication methods for successive refinement of images over wireless channels. We present three different strategies for progressive image transmission with deep JSCC, with different…

Information Theory · Computer Science 2019-05-30 David Burth Kurka , Deniz Gunduz

We propose a novel hybrid joint source-channel coding (JSCC) scheme for robust image transmission over multi-hop networks. In the considered scenario, a mobile user wants to deliver an image to its destination over a mobile cellular…

Signal Processing · Electrical Eng. & Systems 2024-02-09 Chenghong Bian , Yulin Shao , Deniz Gunduz

Semantic- and task-oriented communication has emerged as a promising approach to reducing the latency and bandwidth requirements of next-generation mobile networks by transmitting only the most relevant information needed to complete a…

Information Theory · Computer Science 2024-09-27 Deniz Gündüz , Michèle A. Wigger , Tze-Yang Tung , Ping Zhang , Yong Xiao

We propose novel deep joint source-channel coding (DeepJSCC) algorithms for wireless image transmission over multi-input multi-output (MIMO) Rayleigh fading channels, when channel state information (CSI) is available only at the receiver.…

Signal Processing · Electrical Eng. & Systems 2023-06-22 Chenghong Bian , Yulin Shao , Haotian Wu , Deniz Gunduz

We consider distributed image transmission over a noisy multiple access channel (MAC) using deep joint source-channel coding (DeepJSCC). It is known that Shannon's separation theorem holds when transmitting independent sources over a MAC in…

Image and Video Processing · Electrical Eng. & Systems 2023-10-10 Selim F. Yilmaz , Can Karamanli , Deniz Gunduz

The emerging field of DNA storage employs strands of DNA bases (A/T/C/G) as a storage medium for digital information to enable massive density and durability. The DNA storage pipeline includes: (1) encoding the raw data into sequences of…

Genomics · Quantitative Biology 2025-01-28 Hadas Abraham , Barak Gahtan , Adir Kobovich , Orian Leitersdorf , Alex M. Bronstein , Eitan Yaakobi

We consider error-correcting coding for DNA-based storage. We model the DNA storage channel as a multi-draw IDS channel where the input data is chunked into $M$ short DNA strands, which are copied a random number of times, and the channel…

Information Theory · Computer Science 2023-06-22 Lorenz Welter , Issam Maarouf , Andreas Lenz , Antonia Wachter-Zeh , Eirik Rosnes , Alexandre Graell i Amat

Error-correcting codes over sets, with applications to DNA storage, are studied. The DNA-storage channel receives a set of sequences, and produces a corrupted version of the set, including sequence loss, symbol substitution, symbol…

Information Theory · Computer Science 2021-07-12 Hengjia Wei , Moshe Schwartz

We live in a period where bio-informatics is rapidly expanding, a significant quantity of genomic data has been produced as a result of the advancement of high-throughput genome sequencing technology, raising concerns about the costs…

Quantitative Methods · Quantitative Biology 2023-03-10 Mehedi Hasan Sarkar , Adnan Ferdous Ashrafi

As one of the key techniques to realize semantic communications, end-to-end optimized neural joint source-channel coding (JSCC) has made great progress over the past few years. A general trend in many recent works pushing the model…

Signal Processing · Electrical Eng. & Systems 2024-07-08 Ke Yang , Sixian Wang , Jincheng Dai , Xiaoqi Qin , Kai Niu , Ping Zhang

The exponential increase in storage demand and low lifespan of data storage devices has resulted in long-term archival and preservation emerging as a critical bottlenecks in data storage. In order to meet this demand, researchers are now…

Image and Video Processing · Electrical Eng. & Systems 2025-05-22 Xavier Pic , Raja Appuswamy
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