Related papers: A singular perturbation analysis for the Brusselat…
Biomolecular processes are typically modeled using chemical reaction networks coupled to infinitely large chemical reservoirs. A difference in chemical potential between these reservoirs can drive the system into a non-equilibrium steady…
The one-dimensional Schr\"{o}dinger equation with the singular harmonic oscillator is investigated. The Hermiticity of the operators related to observable physical quantities is used as a criterion to show that the attractive or repulsive…
In this work, a mathematical model of self-oscillatory dynamics of the metabolism in a cell is studied. The full phase-parametric characteristics of variations of the form of attractors depending on the dissipation of a kinetic membrane…
A theoretical analysis is presented to show the general occurrence of phase clusters in weakly, globally coupled oscillators close to a Hopf bifurcation. Through a reductive perturbation method, we derive the amplitude equation with a…
The planar visible fold is a simple singularity in piecewise smooth systems. In this paper, we consider singularly perturbed systems that limit to this piecewise smooth bifurcation as the singular perturbation parameter $\epsilon\rightarrow…
In many applied settings, the chemical Langevin equation and linear noise approximation are used in the simulation and data analysis of stochastic reaction networks. With the goal of exploring the sensitivities of reaction network paths to…
A classical example of a mathematical model for oscillations in a biological system is the Selkov oscillator, which is a simple description of glycolysis. It is a system of two ordinary differential equations which, when expressed in…
We analyze the classical and quantum dynamics of the driven dissipative Bose-Hubbard dimer. Under variation of the driving frequency, the classical system is shown to exhibit a bifurcation to the limit cycle, where its steady-state solution…
Shear bands are narrow zones of intense shear observed during plastic deformations of metals at high strain rates. Because they often precede rupture, their study attracted attention as a mechanism of material failure. Here, we aim to…
We study a two-variable dynamical system modeling pH oscillations in the urea-urease reaction within giant lipid vesicles -- a problem that intrinsically contains multiple, well-separated timescales. Building on an existing, deterministic…
We consider smooth systems limiting as $\epsilon \to 0$ to piecewise-smooth (PWS) systems with a boundary-focus (BF) bifurcation. After deriving a suitable local normal form, we study the dynamics for the smooth system with $0 < \epsilon…
In this work we investigate the effect of density dependent nonlinear diffusion on pattern formation in the Brusselator system. Through linear stability analysis of the basic solution we determine the Turing and the oscillatory instability…
We study the dynamics arising when two identical oscillators are coupled near a Hopf bifurcation where we assume a parameter $\epsilon$ uncouples the system at $\epsilon=0$. Using a normal form for $N=2$ identical systems undergoing Hopf…
Self-oscillating systems, described in classical dynamics as limit cycles, are emerging as canonical models for driven dissipative nonequilibrium open quantum systems, and as key elements in quantum technology. We consider a family of…
Dynamic phase transitions of the Brusselator model is carefully analyzed, leading to a rigorous characterization of the types and structure of the phase transitions of the model from basic homogeneous states. The study is based on the…
Hydrodynamic instabilities often cause spatio-temporal pattern formations and transitions between them. We investigate a model experimental system, a density oscillator, where the bifurcation from a resting state to an oscillatory state is…
The asymmetrically forced, damped Duffing oscillator is introduced as a prototype model for analyzing the homoclinic tangle of symmetric dissipative systems with \textit{symmetry breaking} disturbances. Even a slight fixed asymmetry in the…
We propose conditions for the emergence of Turing patterns in a domain that changes in size by homogeneous growth/shrinkage. These conditions to determine the bifurcation are based on considering the geometric change of a potential function…
This paper studies bifurcations in a three node power system when excitation limits are considered. This is done by approximating the limiter by a smooth function to facilitate bifurcation analysis. Spectacular qualitative changes in the…
We study nonlinear dynamics in a model of three interacting encapsulated gas bubbles in a liquid. The model is a system of three coupled nonlinear oscillators with an external periodic force. Such bubbles have numerous applications, for…