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This study investigates continual fine-tuning strategies for deep learning in online longitudinal electroencephalography (EEG) motor imagery (MI) decoding within a causal setting involving a large user group and multiple sessions per…

Machine Learning · Computer Science 2025-02-12 Martin Wimpff , Bruno Aristimunha , Sylvain Chevallier , Bin Yang

We study the problem of training self-supervised foundation models for functional MRI. Our main contributions are: (1) we introduce a new model family (CortexMAE) trained using the masked autoencoder framework on 2.1K hours of open fMRI…

Multi-site MRI studies often suffer from site-specific variations arising from differences in methodology, hardware, and acquisition protocols, thereby compromising accuracy and reliability in clinical AI/ML tasks. We present PRISM…

Image and Video Processing · Electrical Eng. & Systems 2024-11-12 Sarang Galada , Tanurima Halder , Kunal Deo , Ram P Krish , Kshitij Jadhav

Magnetic Resonance Imaging (MRI) is indispensable in clinical practice but remains constrained by fragmented, multi-stage workflows encompassing acquisition, reconstruction, segmentation, detection, diagnosis, and reporting. While deep…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Xingxin He , Aurora Rofena , Ruimin Feng , Haozhe Liao , Zhaoye Zhou , Albert Jang , Fang Liu

Imaging sites around the world generate growing amounts of medical scan data with ever more versatile and affordable technology. Large-scale studies acquire MRI for tens of thousands of participants, together with metadata ranging from…

Machine Learning · Computer Science 2024-04-23 Taro Langner

The pre-trained transformer demonstrates remarkable generalization ability in natural image processing. However, directly transferring it to magnetic resonance images faces two key challenges: the inability to adapt to the specificity of…

Computer Vision and Pattern Recognition · Computer Science 2026-01-21 Jingkai Li , Xiaoze Tian , Yuhang Shen , Jia Wang , Dianjie Lu , Guijuan Zhang , Zhuoran Zheng

Purpose: Conventional automated segmentation of the head anatomy in MRI distinguishes different brain and non-brain tissues based on image intensities and prior tissue probability maps (TPM). This works well for normal head anatomies, but…

Image and Video Processing · Electrical Eng. & Systems 2021-05-20 Lukas Hirsch , Yu Huang , Lucas C Parra

The "pre-training then fine-tuning (FT)" paradigm is widely adopted to boost the model performance of deep learning-based methods for medical volumetric segmentation. However, conventional full FT incurs high computational and memory costs.…

Computer Vision and Pattern Recognition · Computer Science 2024-05-29 Jiachen Shen , Wenxuan Wang , Chen Chen , Jianbo Jiao , Jing Liu , Yan Zhang , Shanshan Song , Jiangyun Li

Recent advancements in deep learning have enabled the development of generalizable models that achieve state-of-the-art performance across various imaging tasks. Vision Transformer (ViT)-based architectures, in particular, have demonstrated…

Image and Video Processing · Electrical Eng. & Systems 2025-02-11 Guoyao Shen , Mengyu Li , Stephan Anderson , Chad W. Farris , Xin Zhang

Decoding language from the human brain remains a grand challenge for Brain-Computer Interfaces (BCIs). Current approaches typically rely on unimodal brain representations, neglecting the brain's inherently multimodal processing. Inspired by…

Computation and Language · Computer Science 2025-08-12 Chunyu Ye , Yunhao Zhang , Jingyuan Sun , Chong Li , Chengqing Zong , Shaonan Wang

Image-to-fMRI encoding is important for both neuroscience research and practical applications. However, such "Brain-Encoders" have been typically trained per-subject and per fMRI-dataset, thus restricted to very limited training data. In…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Roman Beliy , Navve Wasserman , Amit Zalcher , Michal Irani

The deployment of pre-trained models (PTMs) has greatly advanced the field of continual learning (CL), enabling positive knowledge transfer and resilience to catastrophic forgetting. To sustain these advantages for sequentially arriving…

Machine Learning · Computer Science 2025-04-18 Liyuan Wang , Jingyi Xie , Xingxing Zhang , Hang Su , Jun Zhu

Large-scale pre-trained models have achieved remarkable success in various computer vision tasks. A standard approach to leverage these models is to fine-tune all model parameters for downstream tasks, which poses challenges in terms of…

Computer Vision and Pattern Recognition · Computer Science 2023-12-18 Yi Xin , Junlong Du , Qiang Wang , Zhiwen Lin , Ke Yan

Multi-task scene understanding aims to design models that can simultaneously predict several scene understanding tasks with one versatile model. Previous studies typically process multi-task features in a more local way, and thus cannot…

Computer Vision and Pattern Recognition · Computer Science 2023-06-09 Hanrong Ye , Dan Xu

Leveraging multimodal information from biosignals is vital for building a comprehensive representation of people's physical and mental states. However, multimodal biosignals often exhibit substantial distributional shifts between…

Machine Learning · Computer Science 2024-04-22 Ran Liu , Ellen L. Zippi , Hadi Pouransari , Chris Sandino , Jingping Nie , Hanlin Goh , Erdrin Azemi , Ali Moin

We present a method for trajectory planning for autonomous driving, learning image-based context embeddings that align with motion prediction frameworks and planning-based intention input. Within our method, a ViT encoder takes raw images…

Computer Vision and Pattern Recognition · Computer Science 2025-12-01 Maitrayee Keskar , Mohan Trivedi , Ross Greer

Recent advancements in multimodal pre-training models have significantly advanced computational pathology. However, current approaches predominantly rely on visual-language models, which may impose limitations from a molecular perspective…

Computer Vision and Pattern Recognition · Computer Science 2024-12-03 Minghao Han , Dingkang Yang , Jiabei Cheng , Xukun Zhang , Linhao Qu , Zizhi Chen , Lihua Zhang

Decoding natural visual scenes from brain activity has flourished, with extensive research in single-subject tasks and, however, less in cross-subject tasks. Reconstructing high-quality images in cross-subject tasks is a challenging problem…

Computer Vision and Pattern Recognition · Computer Science 2024-12-17 Zixuan Gong , Qi Zhang , Guangyin Bao , Lei Zhu , Ke Liu , Liang Hu , Duoqian Miao

Brain Tumor Segmentation (BraTS) plays a critical role in clinical diagnosis, treatment planning, and monitoring the progression of brain tumors. However, due to the variability in tumor appearance, size, and intensity across different MRI…

Image and Video Processing · Electrical Eng. & Systems 2024-09-19 Hongjun Zhu , Jiaohang Huang , Kuo Chen , Xuehui Ying , Ying Qian

Brain encoder models predict cortical fMRI responses from the internal activations of pretrained vision and language networks, and are typically evaluated by held-out prediction accuracy. This is a useful signal for training but a poor one…

Neurons and Cognition · Quantitative Biology 2026-05-15 Stuart Bladon , Brinnae Bent