Related papers: NoMoPy: Noise Modeling in Python

Recent advancements in nanopore sequencing technology, particularly the R10 nanopore from Oxford Nanopore Technology, have necessitated the development of improved data processing methods to utilize their potential for more than 9-mer…

Despite extensive research, time series classification and forecasting on noisy data remain highly challenging. The main difficulties lie in finding suitable mathematical concepts to describe time series and effectively separate noise from…

We address the problem of maximizing an unknown submodular function that can only be accessed via noisy evaluations. Our work is motivated by the task of summarizing content, e.g., image collections, by leveraging users' feedback in form of…

Hottopixx, proposed by Bittorf et al. at NIPS 2012, is an algorithm for solving nonnegative matrix factorization (NMF) problems under the separability assumption. Separable NMFs have important applications, such as topic extraction from…

Profile hidden Markov models (pHMMs) are widely employed in various bioinformatics applications to identify similarities between biological sequences, such as DNA or protein sequences. In pHMMs, sequences are represented as graph…

We consider the non-parametric regression problem under Huber's $\epsilon$-contamination model, in which an $\epsilon$ fraction of observations are subject to arbitrary adversarial noise. We first show that a simple local binning median…

Online (also called "recursive" or "adaptive") estimation of fixed model parameters in hidden Markov models is a topic of much interest in times series modelling. In this work, we propose an online parameter estimation algorithm that…

In this paper, we present pomdp_py, a general purpose Partially Observable Markov Decision Process (POMDP) library written in Python and Cython. Existing POMDP libraries often hinder accessibility and efficient prototyping due to the…

Imaginary-time response functions of finite-temperature quantum systems are often obtained with methods that exhibit stochastic or systematic errors. Reducing these errors comes at a large computational cost -- in quantum Monte Carlo…

This paper addresses the challenge of a particular class of noisy state observations in Markov Decision Processes (MDPs), a common issue in various real-world applications. We focus on modeling this uncertainty through a confusion matrix…

We introduce DeepMoD, a Deep learning based Model Discovery algorithm. DeepMoD discovers the partial differential equation underlying a spatio-temporal data set using sparse regression on a library of possible functions and their…

Weakly supervised named entity recognition methods train label models to aggregate the token annotations of multiple noisy labeling functions (LFs) without seeing any manually annotated labels. To work well, the label model needs to…

In this paper, we explore the class of the Hidden Semi-Markov Model (HSMM), a flexible extension of the popular Hidden Markov Model (HMM) that allows the underlying stochastic process to be a semi-Markov chain. HSMMs are typically used less…

In this work we propose, implement, and evaluate novel models called Third-Order Hidden Markov Models (HMM3s) to enhance low performance of text-independent speaker identification in shouted talking environments. The proposed models have…

With a growing focus on morphological inflection systems for languages where high-quality data is scarce, training data noise is a serious but so far largely ignored concern. We aim at closing this gap by investigating the types of noise…

1. Hidden Markov models (HMMs) are powerful tools for modelling time-series data with underlying state structure. However, selecting appropriate parametric forms for the state-dependent distributions is often challenging and can lead to…

Cross-modal noise-robust learning is a challenging task since noisy correspondence is hard to recognize and rectify. Due to the cumulative and unavoidable negative impact of unresolved noise, existing methods cannot maintain a stable…

Deep learning-based probabilistic models of musical data are producing increasingly realistic results and promise to enter creative workflows of many kinds. Yet they have been little-studied in a performance setting, where the results of…

Large language models (LLMs) often produce inaccurate or misleading content-hallucinations. To address this challenge, we introduce Noise-Augmented Fine-Tuning (NoiseFiT), a novel framework that leverages adaptive noise injection based on…

In this paper, we present NEMO, a system that translates Natural-language descriptions of decision problems into formal Executable Mathematical Optimization implementations, operating collaboratively with users or autonomously. Existing…