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Related papers: Spatial Joint Species N-Mixture Models for Multi-S…

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Determining spatial distributions of species and communities are key objectives of ecology and conservation. Joint species distribution models use multi-species detection-nondetection data to estimate species and community distributions.…

Applications · Statistics 2022-12-15 Jeffrey W. Doser , Andrew O. Finley , Sudipto Banerjee

Models of the spatial distribution of animals provide useful tools to help ecologists quantify species-environment relationships, and they are increasingly being used to help determine the impacts of climate and habitat changes on species.…

Methodology · Statistics 2020-09-04 Joe Watson , Ruth Joy , Dominic Tollit , Sheila J Thornton , Marie Auger-Méthé

Species distribution models (SDMs) are increasingly used in ecology, biogeography, and wildlife management to learn about the species-habitat relationships and abundance across space and time. Distance sampling (DS) and capture-recapture…

Methodology · Statistics 2022-03-09 Narmadha M. Mohankumar , Trevor J. Hefley , Katy Silber , W. Alice Boyle

Citizen science biodiversity data present great opportunities for ecology and conservation across vast spatial and temporal scales. However, the opportunistic nature of these data lacks the sampling structure required by modeling…

Machine Learning · Computer Science 2025-04-15 Nahian Ahmed , Mark Roth , Tyler A. Hallman , W. Douglas Robinson , Rebecca A. Hutchinson

Species distribution models (SDMs) aim to predict the distribution of species by relating occurrence data with environmental variables. Recent applications of deep learning to SDMs have enabled new avenues, specifically the inclusion of…

Machine Learning · Computer Science 2024-11-07 Nina van Tiel , Robin Zbinden , Emanuele Dalsasso , Benjamin Kellenberger , Loïc Pellissier , Devis Tuia

Accurately identifying spatial patterns of species distribution is crucial for scientific insight and societal benefit, aiding our understanding of species fluctuations. The increasing quantity and quality of ecological datasets present…

Joint species distribution models (JSDM) are among the most important statistical tools in community ecology. They are routinely used for inference and various prediction tasks, such as to build species distribution maps or biomass…

We propose an extension of the N-mixture model which allows for the estimation of both abundances of multiple species simultaneously and their inter-species correlations. We also propose further extensions to this multi-species N-mixture…

Methodology · Statistics 2022-08-17 Niamh Mimnagh , Andrew Parnell , Estevao Prado , Rafael de Andrade Moral

Joint Species Distribution Models are essential for understanding how ecological drivers shape species communities. However, most existing approaches are limited by rigid parametric distributions for count data and the inability to model…

Methodology · Statistics 2025-12-05 Lukas Graz , Luisa Barbanti , Roland Brandl , Torsten Hothorn

Effective marine spatial plans require information on the distribution and abundance of biological resources that are potentially vulnerable to anthropogenic change. In North America, spatially-explicit abundance estimates of marine birds…

Applications · Statistics 2017-05-03 A. D. Smith , B. Hofner , J. E. Osenkowski , T. Allison , G. Sadoti , S. R. McWilliams , P. W. C. Paton

We present a new methodology to model total abundance by merging count data information from surveys with different sampling protocols. The proposed methods are used for data from national breeding bird monitoring programs in Norway and…

Conservation science depends on an accurate understanding of what's happening in a given ecosystem. How many species live there? What is the makeup of the population? How is that changing over time? Species Distribution Modeling (SDM) seeks…

Machine Learning · Computer Science 2021-07-23 Sara Beery , Elijah Cole , Joseph Parker , Pietro Perona , Kevin Winner

This paper focuses on a core task in computational sustainability and statistical ecology: species distribution modeling (SDM). In SDM, the occurrence pattern of a species on a landscape is predicted by environmental features based on…

Machine Learning · Computer Science 2021-02-19 Eugene Seo , Rebecca A. Hutchinson , Xiao Fu , Chelsea Li , Tyler A. Hallman , John Kilbride , W. Douglas Robinson

In air pollution studies, dispersion models provide estimates of concentration at grid level covering the entire spatial domain, and are then calibrated against measurements from monitoring stations. However, these different data sources…

Applications · Statistics 2020-08-17 Chiara Forlani , Samir Bhatt , Michela Cameletti , Elias Krainski , Marta Blangiardo

1. Accurate estimates of demographic parameters are required to infer appropriate ecological relationships and inform management actions. Recently developed N-mixture models use count data from unmarked individuals to estimate demographic…

Quantitative Methods · Quantitative Biology 2015-12-29 Joshua H. Schmidt , Devin S. Johnson , Mark S. Lindberg , Layne G. Adams

The occurrence and distributions of wildlife populations and communities are shifting as a result of global changes. To evaluate whether these shifts are negatively impacting biodiversity processes, it is critical to monitor the status,…

Populations and Evolution · Quantitative Biology 2021-09-07 Jeffrey W. Doser , Wendy Leuenberger , T. Scott Sillett , Michael T. Hallworth , Elise F. Zipkin

Joint species distribution models are popular in ecology for modeling covariate effects on species occurrence, while characterizing cross-species dependence. Data consist of multivariate binary indicators of the occurrences of different…

Methodology · Statistics 2025-07-08 Federica Stolf , David B. Dunson

Continuous space species distribution models (SDMs) have a long-standing history as a valuable tool in ecological statistical analysis. Geostatistical and preferential models are both common models in ecology. Geostatistical models are…

Applications · Statistics 2023-07-17 Mario Figueira , David Conesa , Antonio López-Quílez , Iosu Paradinas

Earthworms are key drivers of soil function, influencing organic matter turnover, nutrient cycling, and soil structure. Understanding the environmental controls on their distribution is essential for predicting the impacts of land use and…

In fisheries ecology, species abundance data are often collected by multiple surveys, each with unique characteristics. This article is motivated by a dataset of Atlantic sea scallop abundance records along the northeast coast of the United…

Applications · Statistics 2026-04-03 Quan Vu , Francis K. C. Hui , A. H. Welsh , Samuel Muller , Eva Cantoni , Christopher R. Haak
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