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Designing functional transition metal complexes (TMCs) faces challenges due to the vast search space of metals and ligands, requiring efficient optimization strategies. Traditional genetic algorithms (GAs) are commonly used, employing…

Chemical Physics · Physics 2024-10-25 Jieyu Lu , Zhangde Song , Qiyuan Zhao , Yuanqi Du , Yirui Cao , Haojun Jia , Chenru Duan

This paper pursues the insight that large language models (LLMs) trained to generate code can vastly improve the effectiveness of mutation operators applied to programs in genetic programming (GP). Because such LLMs benefit from training…

Neural and Evolutionary Computing · Computer Science 2022-06-20 Joel Lehman , Jonathan Gordon , Shawn Jain , Kamal Ndousse , Cathy Yeh , Kenneth O. Stanley

Large language models (LLMs) are having transformative impacts across a wide range of scientific fields, particularly in the biomedical sciences. Just as the goal of Natural Language Processing is to understand sequences of words, a major…

Genomics · Quantitative Biology 2024-09-24 Gonzalo Benegas , Chengzhong Ye , Carlos Albors , Jianan Canal Li , Yun S. Song

Large language models (LLMs) have not only revolutionized natural language processing but also extended their prowess to various domains, marking a significant stride towards artificial general intelligence. The interplay between LLMs and…

Neural and Evolutionary Computing · Computer Science 2024-05-30 Xingyu Wu , Sheng-hao Wu , Jibin Wu , Liang Feng , Kay Chen Tan

Generative Large Language Models (LLMs) hold significant promise in healthcare, demonstrating capabilities such as passing medical licensing exams and providing clinical knowledge. However, their current use as information retrieval tools…

Evaluating Large Language Models (LLMs) with respect to real-world code complexity is essential. Otherwise, there is a risk of overestimating LLMs' programming abilities based on simplistic benchmarks, only to be disappointed when using…

Software Engineering · Computer Science 2026-02-24 Yang Chen , Shuyang Liu , Reyhaneh Jabbarvand

This work analyzes the use of large language models (LLMs) for detecting domain generation algorithms (DGAs). We perform a detailed evaluation of two important techniques: In-Context Learning (ICL) and Supervised Fine-Tuning (SFT), showing…

Computation and Language · Computer Science 2024-11-06 Reynier Leyva La O , Carlos A. Catania , Tatiana Parlanti

With the advent of large language models (LLMs), in both the open source and proprietary domains, attention is turning to how to exploit such artificial intelligence (AI) systems in assisting complex scientific tasks, such as material…

Human-Computer Interaction · Computer Science 2024-01-26 Yongtao Liu , Marti Checa , Rama K. Vasudevan

Programming reliability algorithms is crucial for risk assessment in geotechnical engineering. This study explores the possibility of automating and accelerating this task using Generative AI based on Large Language Models (LLMs).…

Applications · Statistics 2025-06-25 Atma Sharma , Jie Zhang , Meng Lu , Shuangyi Wu , Baoxiang Li

Large Language Models (LLMs) and pre-trained Language Models (LMs) have achieved impressive success on many software engineering tasks (e.g., code completion and code generation). By leveraging huge existing code corpora (e.g., GitHub),…

Software Engineering · Computer Science 2025-01-16 Xin Yin , Chao Ni , Xiaodan Xu , Xinrui Li , Xiaohu Yang

The applications of large language models (LLMs) are promising for biomedical and healthcare research. Despite the availability of open-source LLMs trained using a wide range of biomedical data, current research on the applications of LLMs…

Machine Learning · Computer Science 2024-09-25 Tianyu Liu , Yijia Xiao , Xiao Luo , Hua Xu , W. Jim Zheng , Hongyu Zhao

The evolution of Large Language Models (LLMs) like ChatGPT and GPT-4 has sparked discussions on the advent of Artificial General Intelligence (AGI). However, replicating such advancements in open-source models has been challenging. This…

This study explores the potential of Large Language Models (LLMs) in automating the repair of C programs. We present a framework that integrates spectrum-based fault localization (SBFL), runtime feedback, and Chain-of-Thought-structured…

Software Engineering · Computer Science 2025-09-04 Mahdi Farzandway , Fatemeh Ghassemi

Purpose: Large Language Models (LLMs) like GPT (Generative Pre-trained Transformer) from OpenAI and LLaMA (Large Language Model Meta AI) from Meta AI are increasingly recognized for their potential in the field of cheminformatics,…

Biomolecules · Quantitative Biology 2024-05-22 Shaghayegh Sadeghi , Alan Bui , Ali Forooghi , Jianguo Lu , Alioune Ngom

Generative Large Language Models (LLMs) are increasingly used in non-generative software maintenance tasks, such as fault localization (FL). Success in FL depends on a models ability to reason about program semantics beyond surface-level…

While Large Language Models (LLMs) have demonstrated exceptional multitasking abilities, fine-tuning these models on downstream, domain-specific datasets is often necessary to yield superior performance on test sets compared to their…

Computation and Language · Computer Science 2024-03-15 Haoran Yang , Yumeng Zhang , Jiaqi Xu , Hongyuan Lu , Pheng Ann Heng , Wai Lam

Recent advancements in generative AI have led to the widespread adoption of large language models (LLMs) in software engineering, addressing numerous long-standing challenges. However, a comprehensive study examining the capabilities of…

Software Engineering · Computer Science 2025-03-04 Ting Zhang , Chengran Yang , Yindu Su , Martin Weyssow , Hung Nguyen , Tan Bui , Hong Jin Kang , Yikun Li , Eng Lieh Ouh , Lwin Khin Shar , David Lo

As large language models (LLMs) increasingly shape the AI landscape, fine-tuning pretrained models has become more popular than in the pre-LLM era for achieving optimal performance in domain-specific tasks. However, pretrained LLMs such as…

Computation and Language · Computer Science 2025-04-01 Rana Muhammad Shahroz Khan , Pingzhi Li , Sukwon Yun , Zhenyu Wang , Shahriar Nirjon , Chau-Wai Wong , Tianlong Chen

Unit testing plays a pivotal role in software development, improving software quality and reliability. However, generating effective test cases manually is time-consuming, prompting interest in unit testing research. Recently, Large…

Software Engineering · Computer Science 2024-12-24 Ye Shang , Quanjun Zhang , Chunrong Fang , Siqi Gu , Jianyi Zhou , Zhenyu Chen

Large Language Models (LLMs) can generate plausible test code. Intuitively they generate this by imitating tests seen in their training data, rather than reasoning about execution semantics. However, such reasoning is important when…

Software Engineering · Computer Science 2025-03-12 Philipp Straubinger , Marvin Kreis , Stephan Lukasczyk , Gordon Fraser