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There is evidence that the self-assembly of complex molecular systems often proceeds hierarchically, by first building subunits that later assemble in larger entities, in a process that can repeat multiple times. Yet, our understanding of…

Soft Condensed Matter · Physics 2025-09-15 Miranda Holmes-Cerfon , Matthieu Wyart

The network embedding task is to represent the node in the network as a low-dimensional vector while incorporating the topological and structural information. Most existing approaches solve this problem by factorizing a proximity matrix,…

Machine Learning · Computer Science 2022-09-01 Yuchen Liang , Dmitry Krotov , Mohammed J. Zaki

We study the recognition capabilities of the Hopfield model with auxiliary hidden layers, which emerge naturally upon a Hubbard-Stratonovich transformation. We show that the recognition capabilities of such a model at zero-temperature…

Disordered Systems and Neural Networks · Physics 2021-06-16 Marco Benedetti , Victor Dotsenko , Giulia Fischetti , Enzo Marinari , Gleb Oshanin

We examine a previouly introduced attractor neural network model that explains the persistent activities of neurons in the anterior ventral temporal cortex of the brain. In this model, the coexistence of several attractors including…

Disordered Systems and Neural Networks · Physics 2009-11-10 T. Uezu , A. Hirano , M. Okada

We describe a simple nearest-neighbor Ising model that is capable of supporting a gas, liquid, crystal, in characteristic relationship to each other. As the parameters of the model are varied one obtains characteristic patterns of phase…

Statistical Mechanics · Physics 2009-11-10 Davide Cellai , Hector Cuevas , Aonghus Lawlor , Gavin D. McCullagh , Kenneth A. Dawson

We propose a novel method to reconstruct the 3D shapes of transparent objects using hand-held captured images under natural light conditions. It combines the advantage of explicit mesh and multi-layer perceptron (MLP) network, a hybrid…

Computer Vision and Pattern Recognition · Computer Science 2023-03-30 Jiamin Xu , Zihan Zhu , Hujun Bao , Weiwei Xu

Modern retrieval systems do not rely on a single ranking model to construct their rankings. Instead, they generally take a cascading approach where a sequence of ranking models are applied in multiple re-ranking stages. Thereby, they…

Information Retrieval · Computer Science 2025-04-17 Harrie Oosterhuis , Rolf Jagerman , Zhen Qin , Xuanhui Wang

High-throughput computational materials design promises to greatly accelerate the process of discovering new materials and compounds, and of optimizing their properties. The large databases of structures and properties that result from…

Chemical Physics · Physics 2016-11-22 Sandip De , Felix Musil , Teresa Ingram , Carsten Baldauf , Michele Ceriotti

Recent decades have seen the discovery of numerous complex materials. At the root of the complexity underlying many of these materials lies a large number of possible contending atomic- and larger-scale configurations and the intricate…

Materials Science · Physics 2023-01-30 P. Ronhovde , S. Chakrabarty , M. Sahu , K. K. Sahu , K. F. Kelton , N. Mauro , Z. Nussinov

Phase retrieval in optical imaging refers to the recovery of a complex signal from phaseless data acquired in the form of its diffraction patterns. These patterns are acquired through a system with a coherent light source that employs a…

Different from the traditional classification tasks which assume mutual exclusion of labels, hierarchical multi-label classification (HMLC) aims to assign multiple labels to every instance with the labels organized under hierarchical…

Machine Learning · Computer Science 2019-09-05 Boli Chen , Xin Huang , Lin Xiao , Zixin Cai , Liping Jing

We present a mesoscopic lattice model for non-ideal fluid flows with directional interactions, mimicking the effects of hydrogen-bonds in water. The model supports a rich and complex structural dynamics of the orientational order parameter,…

Mesoscale and Nanoscale Physics · Physics 2015-05-30 Irene Mazzitelli , Maddalena Venturoli , Simone Melchionna , Sauro Succi

We consider dipolar interactions between heteronuclear molecules in a low-dimensional setup consisting of two one-dimensional tubes. We demonstrate that attraction between molecules in different tubes can overcome intratube repulsion and…

Quantum Gases · Physics 2011-08-16 B. Wunsch , N. T. Zinner , I. B. Mekhov , S. -J. Huang , D. -W. Wang , E. Demler

Biological and social networks have recently attracted enormous attention between physicists. Among several, two main aspects may be stressed: A non trivial topology of the graph describing the mutual interactions between agents exists…

Statistical Mechanics · Physics 2015-05-19 Adriano Barra , Elena Agliari

We investigate the retrieval phase diagrams of an asynchronous fully-connected attractor network with non-monotonic transfer function by means of a mean-field approximation. We find for the noiseless zero-temperature case that this…

Disordered Systems and Neural Networks · Physics 2009-10-28 Jun-ichi Inoue

Flocking models with metric and topological interactions are supposed to exhibit distinct features, as for instance the presence and absence of moving polar bands. On the other hand, quenched disorder (spatial heterogeneities) has been…

Biological Physics · Physics 2022-01-04 Parisa Rahmani , Fernando Peruani , Pawel Romanczuk

The Hopfield associative memory model stores random patterns in synaptic couplings according to Hebb's rule and retrieves them through gradient descent on an energy function. This conventional setting, where neurons are assumed to have…

Disordered Systems and Neural Networks · Physics 2026-01-23 Yoshiyuki Kabashima , Kazushi Mimura

Many real-world networks are directed, sparse and hierarchical, with a mixture of feed-forward and feedback connections with respect to the hierarchy. Moreover, a small number of 'master' nodes are often able to drive the whole system. We…

Disordered Systems and Neural Networks · Physics 2022-06-22 Niall Rodgers , Peter Tino , Samuel Johnson

A multicomponent extension of our recent theory of simple fluids [ U.M.B. Marconi and S. Melchionna, Journal of Chemical Physics, 131, 014105 (2009) ] is proposed to describe miscible and immiscible liquid mixtures under inhomogeneous, non…

Statistical Mechanics · Physics 2011-02-11 Umberto Marini Bettolo Marconi , Simone Melchionna

Multi-component self-assembly mixtures offer the possibility of encoding multiple target structures with the same set of interacting components. Selective retrieval of one of the stored structures has been attempted by preparing an initial…

Soft Condensed Matter · Physics 2022-03-23 Arunkumar Bupathy , Daan Frenkel , Srikanth Sastry
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