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Related papers: Hopping and crawling DNA-coated colloids

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We propose a model that can account for the experimentally observed phase behavior of DNA-nanoparticle assemblies (R. Jin et al., JACS 125, 1643 (2003); T. A. Taton et al., Science 289, 1757 (2000)). The binding of DNA-coated nano-particles…

Soft Condensed Matter · Physics 2007-05-23 D. B. Lukatsky , Daan Frenkel

Tracking of individual particle and studying their motion serves as a direct means to understand the dynamics in crowded and complex environments. In this study, the dynamics of tracer particles in the matrix of dense soft-colloidal…

Soft Condensed Matter · Physics 2023-06-28 Jimpaul Samukcham , Lenin S. Shagolsem

We simulate a model of repulsively interacting colloids on a commensurate two-dimensional triangular pinning substrate where the amount of heterogeneous motion that appears at melting can be controlled systematically by turning off a…

Soft Condensed Matter · Physics 2009-11-11 J. -X. Lin , C. Reichhardt , Z. Nussinov , Leonid P. Pryadko , C. J. Olson Reichhardt

We examine the crystallization dynamics of nanoparticles reversibly tethered by DNA hybridization. We show that the crystallization happens readily only in a narrow temperature "slot," and always proceeds via a two-step process, mediated by…

Soft Condensed Matter · Physics 2010-08-13 Wei Dai , Sanat K. Kumar , Francis W. Starr

Immediately before adsorption to a horizontal substrate, sinking polymer-coated colloids can undergo a complex sequence of landing, jumping, crawling and rolling events. Using video tracking we studied the soft adhesion to a horizontal flat…

Soft Condensed Matter · Physics 2018-01-24 Giuseppe Boniello , Christophe Tribet , Emmanuelle Marie , Vincent Croquette , Dražen Zanchi

Synthetic bio-molecular spiders with "legs" made of single-stranded segments of DNA can move on a surface covered by single-stranded segments of DNA called substrates when the substrate DNA is complementary to the leg DNA. If the motion of…

Biological Physics · Physics 2015-06-04 Tibor Antal , P. L. Krapivsky

Microorganisms are able to overcome the thermal randomness of their surroundings by harvesting energy to navigate in viscous fluid environments. In a similar manner, synthetic colloidal microswimmers are capable of mimicking complex…

We present a quantitative, multi-scale coarse-grained model of DNA coated colloids. The parameters of this model are transferable and are solely based on experimental data. As a test case, we focus on nano-sized colloids carrying…

DNA is increasingly employed for bio and nanotechnology thanks to its exquisite versatility and designability. Most of its use is limited to linearised and torsionally relaxed DNA but non-trivial architectures and torsionally constrained --…

Soft Condensed Matter · Physics 2020-09-22 Jan Smrek , Davide Michieletto

The motion of the structure determining components is highly collective, both in amorphous solids and in undercooled liquids. This has been deduced from experimental low temperature data in the tunneling regime as well as from the vanishing…

Disordered Systems and Neural Networks · Physics 2009-11-07 H. R. Schober

Free surfaces in glassy polymer films are known to induce surface mobile layers with enhanced dynamics. Using molecular dynamics simulations of a bead-spring model, we study a wide variety of layer-resolved structural and dynamical…

Soft Condensed Matter · Physics 2018-11-14 Chi-Hang Lam

Recent measurements on ion conducting glasses have revealed that conductivity spectra for various temperatures and ionic concentrations can be superimposed onto a common master curve by an appropriate rescaling of the conductivity and…

Materials Science · Physics 2009-10-31 M. Porto , P. Maass , M. Meyer , A. Bunde , W. Dieterich

Water condensation on superhydrophobic surfaces can generate spontaneous droplet jumping, enabling rapid condensate removal and improved thermal and mass transfer. Although this effect has been extensively demonstrated on densely packed…

Motile living organisms routinely probe their surroundings to adapt in ever-evolving environments. Although synthetic microswimmers offer surrogates for self-propelled living entities, they often lack the complex feedback mechanisms that…

The resistivity of a dense crystalline array of semiconductor nanocrystals (NCs) depends in a sensitive way on the level of doping as well as on the NC size and spacing. The choice of these parameters determines whether electron conduction…

Mesoscale and Nanoscale Physics · Physics 2012-05-23 Brian Skinner , Tianran Chen , B. I. Shklovskii

We study pairs of interacting self-avoiding walks on the 3d simple cubic lattice. They have a common origin and are allowed to overlap only at the same monomer position along the chain. The latter overlaps are indeed favored by an energetic…

Soft Condensed Matter · Physics 2009-10-31 Maria Serena Causo , Barbara Coluzzi , Peter Grassberger

The dynamics of soft colloids in solutions is characterized by internal collective motion as well as center-of-mass diffusion. Using neutron scattering we demonstrate that the competition between the relaxation processes associated with…

Dielectrophoresis (DEP), the motion of polarizable particles in non-uniform electric fields, has become an important tool for the transport, separation, and characterization of microparticles in biomedical and nanoelectronics research. In…

Soft Condensed Matter · Physics 2009-11-11 E. Salonen , E. Terama , I. Vattulainen , M. Karttunen

We investigate irreversibility and dissipation in single molecules that cooperatively fold/unfold in a two state manner under the action of mechanical force. We apply path thermodynamics to derive analytical expressions for the average…

Statistical Mechanics · Physics 2009-02-25 Maria Manosas , Alessandro Mossa , Nuria Forns , Josep Maria Huguet , Felix Ritort

When DNA molecules are heated they denature. This occurs locally so that loops of molten single DNA strands form, connected by intact double-stranded DNA pieces. The properties of this "melting" transition have been intensively…

Biological Physics · Physics 2015-06-29 E. Werner , M. Reiter-Schad , T. Ambjörnsson , B. Mehlig