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Visualization of multidimensional, categorical data is a common challenge across scientific areas and, in particular, the life sciences. The goal is to create a comprehensive overview of the underlying data which allows to assess multiple…

Quantitative Methods · Quantitative Biology 2025-06-19 Matthias Flotho , Philipp Flotho , Andreas Keller

$\chi$iplot is an HTML5-based system for interactive exploration of data and machine learning models. A key aspect is interaction, not only for the interactive plots but also between plots. Even though $\chi$iplot is not restricted to any…

Human-Computer Interaction · Computer Science 2023-10-16 Akihiro Tanaka , Juniper Tyree , Anton Björklund , Jarmo Mäkelä , Kai Puolamäki

Parametric Embedding (PE) has recently been proposed as a general-purpose algorithm for class visualisation. It takes class posteriors produced by a mixture-based clustering algorithm and projects them in 2D for visualisation. However,…

Astrophysics · Physics 2009-11-11 Ata Kaban , Jianyong Sun , Somak Raychaudhury , Louisa Nolan

We describe a novel, interdisciplinary, computational methods course that uses Python and associated numerical and visualization libraries to enable students to implement simulations for a number of different course modules. Problems in…

Chaotic Dynamics · Physics 2007-05-23 Christopher R. Myers , James. P. Sethna

Building and expanding on principles of statistics, machine learning, and scientific inquiry, we propose the predictability, computability, and stability (PCS) framework for veridical data science. Our framework, comprised of both a…

Machine Learning · Statistics 2022-06-08 Bin Yu , Karl Kumbier

Time-series data can represent the behaviors of autonomous systems, such as drones and self-driving cars. The task of binary and multi-class classification for time-series data has become a prominent area of research. Neural networks…

Machine Learning · Statistics 2024-06-26 Danyang Li , Roberto Tron

In this manuscript, we construct a class of projective three-weight linear codes and two classes of projective four-weight linear codes over F2 from the defining sets construction, and determine their weight distributions by using additive…

Information Theory · Computer Science 2025-11-04 Qunying Liao , Zhaohui Zhang , Peipei Zheng

We describe a class calculus that is expressive enough to describe and improve its own learning process. It can design and debug programs that satisfy given input/output constraints, based on its ontology of previously learned programs. It…

Artificial Intelligence · Computer Science 2018-04-11 Daniel J. Buehrer

Self-supervised learning (SSL) has recently emerged as a powerful approach to learning representations from large-scale unlabeled data, showing promising results in time series analysis. The self-supervised representation learning can be…

Machine Learning · Computer Science 2024-03-18 Ziyu Liu , Azadeh Alavi , Minyi Li , Xiang Zhang

This paper proposes a new conceptual framework called Collective Predictive Coding as a Model of Science (CPC-MS) to formalize and understand scientific activities. Building on the idea of collective predictive coding originally developed…

Physics and Society · Physics 2024-09-04 Tadahiro Taniguchi , Shiro Takagi , Jun Otsuka , Yusuke Hayashi , Hiro Taiyo Hamada

As enthusiasm for scaling computation (data and parameters) in the pretraining era gradually diminished, test-time scaling (TTS), also referred to as ``test-time computing'' has emerged as a prominent research focus. Recent studies…

Computation and Language · Computer Science 2025-05-06 Qiyuan Zhang , Fuyuan Lyu , Zexu Sun , Lei Wang , Weixu Zhang , Wenyue Hua , Haolun Wu , Zhihan Guo , Yufei Wang , Niklas Muennighoff , Irwin King , Xue Liu , Chen Ma

This paper introduces \texttt{infotheory}: a package written in C++ and usable from Python and C++, for multivariate information theoretic analyses of discrete and continuous data. This package allows the user to study the relationship…

Information Theory · Computer Science 2021-06-11 Madhavun Candadai , Eduardo J. Izquierdo

Tick is a statistical learning library for Python~3, with a particular emphasis on time-dependent models, such as point processes, and tools for generalized linear models and survival analysis. The core of the library is an optimization…

Machine Learning · Statistics 2018-03-16 Emmanuel Bacry , Martin Bompaire , Stéphane Gaïffas , Soren Poulsen

Deep learning on graphs has recently achieved remarkable success on a variety of tasks, while such success relies heavily on the massive and carefully labeled data. However, precise annotations are generally very expensive and…

Machine Learning · Computer Science 2021-09-30 Lirong Wu , Haitao Lin , Zhangyang Gao , Cheng Tan , Stan. Z. Li

Causal inference is a critical research topic across many domains, such as statistics, computer science, education, public policy and economics, for decades. Nowadays, estimating causal effect from observational data has become an appealing…

Methodology · Statistics 2020-02-10 Liuyi Yao , Zhixuan Chu , Sheng Li , Yaliang Li , Jing Gao , Aidong Zhang

Teaching the software engineers of the future to write high-quality code with good style and structure is important. This systematic literature review identifies existing instructional approaches, their objectives, and the strategies used…

Software Engineering · Computer Science 2025-02-26 Sara Nurollahian , Hieke Keuning , Eliane Wiese

Predicting long-term outcomes of interventions is necessary for educational and social policy-making processes that might widely influence our society for the long-term. However, performing such predictions based on data from large-scale…

Applications · Statistics 2018-01-04 Hyemin Han , Kangwook Lee , Firat Soylu

partycls is a Python framework for cluster analysis of systems of interacting particles. By grouping particles that share similar structural or dynamical properties, partycls enables rapid and unsupervised exploration of the system's…

Computational Physics · Physics 2021-11-22 Joris Paret , Daniele Coslovich

Multimodal learning is an essential paradigm for addressing complex real-world problems, where individual data modalities are typically insufficient to accurately solve a given modelling task. While various deep learning approaches have…

Machine Learning · Computer Science 2023-07-04 Gabriele Dominici , Pietro Barbiero , Lucie Charlotte Magister , Pietro Liò , Nikola Simidjievski

Scenario building is an established method to anticipate the future of emerging technologies. Its primary goal is to use narratives to map future trajectories of technology development and sociotechnical adoption. Following this process,…

Human-Computer Interaction · Computer Science 2025-06-09 Julia Barnett , Kimon Kieslich , Jasmine Sinchai , Nicholas Diakopoulos
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