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We present a hybrid Eulerian-Lagrangian method for the direct simulation of three-dimensional, heterogeneous structures made of soft fibers and immersed in incompressible viscous fluids. Fiber-based organization of matter is pervasive in…

Computational Physics · Physics 2024-01-19 Arman Tekinalp , Yashraj Bhosale , Songyuan Cui , Fan Kiat Chan , Mattia Gazzola

We present a model for the efficient simulation of generic bilayer membranes. Individual lipids are represented by one head- and two tail-beads. By means of simple pair potentials these robustly self-assemble to a fluid bilayer state over a…

Soft Condensed Matter · Physics 2009-11-11 Ira R. Cooke , Kurt Kremer , Markus Deserno

We describe an immersed boundary method in which the fluid-structure coupling is achieved in an Eulerian framework. The method is an improved extension of the immersed boundary method originally developed by Kajishima et al. [1], which…

Fluid Dynamics · Physics 2022-01-12 Naoki Hori , Marco Edoardo Rosti , Shu Takagi

In this paper, we present an Eulerian-Lagrangian methodology to simulate the interaction between a fluid-fluid interface and a solid particle in the presence of wetting effects. The target physical problem is represented by ternary phase…

Fluid Dynamics · Physics 2023-09-21 Fernando Kevin Miranda S. Cruz , Cristian Marchioli

Elastic filaments are vital to biological, physical and engineering systems, from cilia driving fluid in the lungs to artificial swimmers and micro-robotics. Simulating slender structures requires intricate balance of elastic, body, active,…

Biological Physics · Physics 2023-06-02 Paul Fuchter , Hermes Bloomfield-Gadêlha

The Eulerian fluid simulation is an important HPC application. The neural network has been applied to accelerate it. The current methods that accelerate the fluid simulation with neural networks lack flexibility and generalization. In this…

Machine Learning · Computer Science 2020-08-31 Wenqian Dong , Jie Liu , Zhen Xie , Dong Li

Liquid spreading in gas-liquid concurrent trickle-bed reactors is simulated using an Eulerian twofluid CFD approach. In order to propose a model that describes exhaustively all interaction forces acting on each fluid phase with an emphasis…

This paper presents a numerical method for the simulation of fluid-structure interaction specifically tailored to interactions between Newtonian fluids and a large number of slender viscoelastic Cosserat rods. Because of their high…

Soft Condensed Matter · Physics 2022-01-13 S. Tschisgale , J. Fröhlich

A variety of models for the membrane-mediated interaction of particles in lipid membranes, mostly well-established in theoretical physics, is reviewed from a mathematical perspective. We provide mathematically consistent formulations in a…

Analysis of PDEs · Mathematics 2016-06-29 Charles M. Elliott , Carsten Gräser , Graham Hobbs , Ralf Kornhuber , Maren-Wanda Wolf

We study the kinematics and dynamics of a highly compliant membrane disk placed head-on in a uniform flow. With increasing flow velocity, the membrane deforms nonlinearly into increasingly parachute-like shapes. These aerodynamically…

Fluid Dynamics · Physics 2023-09-11 Varghese Mathai , Asimanshu Das , Dante L. Naylor , Kenneth S. Breuer

Soft robots, distinguished by their inherent compliance and continuum structures, present unique modeling challenges, especially when subjected to significant external loads such as gravity and payloads. In this study, we introduce an…

Robotics · Computer Science 2025-04-29 Yu Mei , Shangyuan Yuan , Xinda Qi , Preston Fairchild , Xiaobo Tan

The study of vesicles in suspension is important to understand the complicated dynamics exhibited by cells in vivo and in vitro. We developed a computer simulation based on the boundary-integral method to model the three dimensional…

Biological Physics · Physics 2013-07-24 Ivan Rey Suarez , Chad Leidy , Gabriel Tellez , Guillaume Gay , Andres Gonzalez-Mancera

We investigate buckling of soft elastic capsules under negative pressure or for reduced capsule volume. Based on nonlinear shell theory and the assumption of a hyperelastic capsule membrane, shape equations for axisymmetric and initially…

Soft Condensed Matter · Physics 2011-12-01 Sebastian Knoche , Jan Kierfeld

We present a novel approach to probe elastic properties of polyelectrolyte multilayer microcapsules. The method is based on measurements of the capsule load-deformation curves with the atomic force microscope. The experiment suggests that…

Soft Condensed Matter · Physics 2009-11-10 V. V. Lulevich , D. Andrienko , O. I. Vinogradova

We present a high-fidelity three dimensional computational framework for simulating the bulk mechanical behavior of granular aggregates composed of deformable brittle grains. Departing from classical discrete element methods (DEM), our…

Soft Condensed Matter · Physics 2025-07-16 Debdeep Bhattacharya , Davood Damircheli , Robert P. Lipton

Organoids are in vitro cellular collectives from which brain-like, or gut-like, or kidney-like structures emerge. To make quantitative predictions regarding the morphology and rheology of a cellular collective in its initial stages of…

Soft Condensed Matter · Physics 2023-01-12 Tao Zhang , J. M. Schwarz

Animal cells are both encapsulated and subdivided by lipid bilayer membranes. Beyond just acting as boundaries, these membranes' shapes influence the function of cells and their compartments. Physically, membranes are two-dimensional fluids…

Soft Condensed Matter · Physics 2023-03-23 George Dadunashvili , Timon Idema

We develop a three-dimensional Eulerian framework to simulate fluid-structure interaction (FSI) problems on a fixed Cartesian grid using the geometric volume-of-fluid (VOF) method. The coupled problem involves incompressible flow and…

Fluid Dynamics · Physics 2025-05-30 Soham Prajapati , Ali Fakhreddine , Krishnan Mahesh

In this paper, we develop a novel phase-field model for fluid-structure interaction (FSI), that is capable to handle very large deformations as well as topology changes like contact of the solid to the domain boundary. The model is based on…

Computational Physics · Physics 2023-05-03 Dominic Mokbel , Helmut Abels , Sebastian Aland

This study presents a Eulerian theory to elucidate the molecular kinematics in polymer networks and their connection to continuum deformation, grounded in fundamental statistical physics and thermodynamics. Three key innovations are…

Soft Condensed Matter · Physics 2025-07-16 Siyu Wang , Heng Xiao , Lin Zhan
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