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Modern well-performing approaches to neural decoding are based on machine learning models such as decision tree ensembles and deep neural networks. The wide range of algorithms that can be utilized to learn from neural spike trains, which…

Neurons and Cognition · Quantitative Biology 2023-01-30 Ivan Lazarevich , Ilya Prokin , Boris Gutkin , Victor Kazantsev

Deep learning models usually require sufficient training data to achieve high accuracy, but obtaining labeled data can be time-consuming and labor-intensive. Here we introduce a template-based training method to train a 3D U-Net model from…

Image and Video Processing · Electrical Eng. & Systems 2023-08-07 Fang-Cheng Yeh

Conventional modeling approaches have found limitations in matching the increasingly detailed neural network structures and dynamics recorded in experiments to the diverse brain functionalities. On another approach, studies have…

Neurons and Cognition · Quantitative Biology 2017-09-05 Chaofei Hong

In traditional software programs, it is easy to trace program logic from variables back to input, apply assertion statements to block erroneous behavior, and compose programs together. Although deep learning programs have demonstrated…

Machine Learning · Computer Science 2021-10-27 Mike Wu , Noah Goodman , Stefano Ermon

Neuroimaging data analysis often involves \emph{a-priori} selection of data features to study the underlying neural activity. Since this could lead to sub-optimal feature selection and thereby prevent the detection of subtle patterns in…

Neurons and Cognition · Quantitative Biology 2018-07-03 Arna Ghosh , Fabien dal Maso , Marc Roig , Georgios D Mitsis , Marie-Hélène Boudrias

A core challenge in the interpretation of deep neural networks is identifying commonalities between the underlying algorithms implemented by distinct networks trained for the same task. Motivated by this problem, we introduce DYNAMO, an…

Machine Learning · Computer Science 2023-03-01 Jordan Cotler , Kai Sheng Tai , Felipe Hernández , Blake Elias , David Sussillo

The diversity of deep learning applications, datasets, and neural network architectures necessitates a careful selection of the architecture and data that match best to a target application. As an attempt to mitigate this dilemma, this…

Machine Learning · Computer Science 2021-10-22 Amin Banitalebi-Dehkordi , Xinyu Kang , Yong Zhang

Efficient continual learning in humans is enabled by a rich set of neurophysiological mechanisms and interactions between multiple memory systems. The brain efficiently encodes information in non-overlapping sparse codes, which facilitates…

Neural and Evolutionary Computing · Computer Science 2023-01-13 Fahad Sarfraz , Elahe Arani , Bahram Zonooz

We describe a method for utilizing the known structure of input data to make learning more efficient. Our work is in the domain of programming languages, and we use deep neural networks to do program analysis. Computer programs include a…

Neural and Evolutionary Computing · Computer Science 2019-04-01 Zehra Sura , Tong Chen , Hyojin Sung

Encoding models that predict brain response patterns to stimuli are one way to capture this relationship between variability in bottom-up neural systems and individual's behavior or pathological state. However, they generally need a large…

Quantitative Methods · Quantitative Biology 2022-05-17 Zijin Gu , Keith Jamison , Mert Sabuncu , Amy Kuceyeski

In current practice, many image processing tasks are done sequentially (e.g. denoising, dehazing, followed by semantic segmentation). In this paper, we propose a novel multi-task neural network architecture designed for combining sequential…

Computer Vision and Pattern Recognition · Computer Science 2020-05-04 Ilja Gubins , Remco C. Veltkamp

Understanding how the brain responds to sensory inputs is challenging: brain recordings are partial, noisy, and high dimensional; they vary across sessions and subjects and they capture highly nonlinear dynamics. These challenges have led…

Neurons and Cognition · Quantitative Biology 2022-10-03 Omar Chehab , Alexandre Defossez , Jean-Christophe Loiseau , Alexandre Gramfort , Jean-Remi King

Understanding how neural activity gives rise to perception is a central challenge in neuroscience. We address the problem of decoding visual information from high-density intracortical recordings in primates, using the THINGS Ventral Stream…

Neurons and Cognition · Quantitative Biology 2026-01-19 Matteo Ciferri , Matteo Ferrante , Nicola Toschi

The field of deep learning has witnessed a remarkable shift towards extremely compute- and memory-intensive neural networks. These newer larger models have enabled researchers to advance state-of-the-art tools across a variety of fields.…

Machine Learning · Computer Science 2022-07-04 Daniel Nichols , Siddharth Singh , Shu-Huai Lin , Abhinav Bhatele

Understanding specifically where a model focuses on within an image is critical for human interpretability of the decision-making process. Deep learning-based solutions are prone to learning coincidental correlations in training datasets,…

Computer Vision and Pattern Recognition · Computer Science 2024-10-22 Aidan Boyd , Mohamed Trabelsi , Huseyin Uzunalioglu , Dan Kushnir

We present an interactive approach to train a deep neural network pixel classifier for the segmentation of neuronal structures. An interactive training scheme reduces the extremely tedious manual annotation task that is typically required…

Computer Vision and Pattern Recognition · Computer Science 2016-10-31 Felix Gonda , Verena Kaynig , Ray Thouis , Daniel Haehn , Jeff Lichtman , Toufiq Parag , Hanspeter Pfister

Machine learning systems are being used to automate many types of laborious labeling tasks. Facial actioncoding is an example of such a labeling task that requires copious amounts of time and a beyond average level of human domain…

Computer Vision and Pattern Recognition · Computer Science 2019-11-15 Alberto Fung , Daniel McDuff

Learning shared structure across environments facilitates rapid learning and adaptive behavior in neural systems. This has been widely demonstrated and applied in machine learning to train models that are capable of generalizing to novel…

Machine Learning · Statistics 2025-04-09 Ayesha Vermani , Josue Nassar , Hyungju Jeon , Matthew Dowling , Il Memming Park

With advances in neural recording techniques, neuroscientists are now able to record the spiking activity of many hundreds of neurons simultaneously, and new statistical methods are needed to understand the structure of this large-scale…

Neurons and Cognition · Quantitative Biology 2023-03-03 Ganchao Wei , Ian H. Stevenson , Xiaojing Wang

The field has made significant progress in synthesizing realistic human motion driven by various modalities. Yet, the need for different methods to animate various body parts according to different control signals limits the scalability of…

Computer Vision and Pattern Recognition · Computer Science 2023-11-29 Zixiang Zhou , Yu Wan , Baoyuan Wang
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