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Existing methods for explaining black box learning models often focus on building local explanations of model behaviour for a particular data item. It is possible to create global explanations for all data items, but these explanations…

Machine Learning · Computer Science 2023-10-16 Anton Björklund , Jarmo Mäkelä , Kai Puolamäki

Non-linear dimensionality reduction can be performed by \textit{manifold learning} approaches, such as Stochastic Neighbour Embedding (SNE), Locally Linear Embedding (LLE) and Isometric Feature Mapping (ISOMAP). These methods aim to produce…

Machine Learning · Statistics 2021-12-09 Theodoulos Rodosthenous , Vahid Shahrezaei , Marina Evangelou

Explainable artificial intelligence (XAI) is an emerging new domain in which a set of processes and tools allow humans to better comprehend the decisions generated by black box models. However, most of the available XAI tools are often…

Machine Learning · Computer Science 2021-07-22 Zoumpolia Dikopoulou , Serafeim Moustakidis , Patrik Karlsson

Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…

Quantitative Methods · Quantitative Biology 2024-05-06 Ajit J. Nirmal , Peter K. Sorger

Nonlinear dimensional reduction with the manifold assumption, often called manifold learning, has proven its usefulness in a wide range of high-dimensional data analysis. The significant impact of t-SNE and UMAP has catalyzed intense…

Machine Learning · Computer Science 2026-04-02 Jungeum Kim , Xiao Wang

Interpretation and diagnosis of machine learning models have gained renewed interest in recent years with breakthroughs in new approaches. We present Manifold, a framework that utilizes visual analysis techniques to support interpretation,…

Machine Learning · Computer Science 2019-01-18 Jiawei Zhang , Yang Wang , Piero Molino , Lezhi Li , David S. Ebert

Data visualisation helps understanding data represented by multiple variables, also called features, stored in a large matrix where individuals are stored in lines and variable values in columns. These data structures are frequently called…

Human-Computer Interaction · Computer Science 2022-07-25 Haseeb Younis , Paul Trust , Rosane Minghim

Most state-of-the-art machine learning algorithms induce black-box models, preventing their application in many sensitive domains. Hence, many methodologies for explaining machine learning models have been proposed to address this problem.…

Machine Learning · Computer Science 2020-09-15 Tiago Botari , Frederik Hvilshøj , Rafael Izbicki , Andre C. P. L. F. de Carvalho

Machine learning models fit complex algorithms to arbitrarily large datasets. These algorithms are well-known to be high on performance and low on interpretability. We use interactive visualization of slices of predictor space to address…

Machine Learning · Statistics 2021-09-08 Catherine B. Hurley , Mark O'Connell , Katarina Domijan

Energy landscapes provide a conceptual framework for structure prediction, and a detailed understanding of their topological features is necessary to develop efficient methods for their exploration. The ability to visualise these surfaces…

Computational Physics · Physics 2021-11-16 Benjamin W. B. Shires , Chris J. Pickard

The present contribution suggests the use of a multidimensional scaling (MDS) algorithm as a visualization tool for manifold-valued elements. A visualization tool of this kind is useful in signal processing and machine learning whenever…

Machine Learning · Statistics 2013-03-08 Simone Fiori

With the rapid adoption of machine learning techniques for large-scale applications in science and engineering comes the convergence of two grand challenges in visualization. First, the utilization of black box models (e.g., deep neural…

Explainable Artificial Intelligence (XAI) has gained importance in interpreting model predictions. Among leading techniques for XAI, Local Interpretable Model-agnostic Explanations (LIME) is most frequently utilized as it notably helps…

Human-Computer Interaction · Computer Science 2026-02-05 Jeongmin Rhee , Changhee Lee , DongHwa Shin , Bohyoung Kim

Pre-trained on extensive text and image corpora, current Multi-Modal Large Language Models (MLLM) have shown strong capabilities in general visual reasoning tasks. However, their performance is still lacking in physical domains that require…

Artificial Intelligence · Computer Science 2025-07-04 Erle Zhu , Yadi Liu , Zhe Zhang , Xujun Li , Jin Zhou , Xinjie Yu , Minlie Huang , Hongning Wang

Despite the popularisation of machine learning models, more often than not, they still operate as black boxes with no insight into what is happening inside the model. There exist a few methods that allow to visualise and explain why a model…

Machine Learning · Computer Science 2021-06-18 Błażej Leporowski , Alexandros Iosifidis

Data visualization is the process by which data of any size or dimensionality is processed to produce an understandable set of data in a lower dimensionality, allowing it to be manipulated and understood more easily by people. The goal of…

Graphics · Computer Science 2021-07-06 Alexander Kiefer , Md. Khaledur Rahman

Advances in data collection in radiation therapy have led to an abundance of opportunities for applying data mining and machine learning techniques to promote new data-driven insights. In light of these advances, supporting collaboration…

Human-Computer Interaction · Computer Science 2020-10-22 Andrew Wentzel , Guadalupe Canahuate , Lisanne van Dijk , Abdallah Mohamed , Clifton David Fuller , G. Elisabeta Marai

Modern particle physics experiments usually rely on highly complex and large-scale spectrometer devices. In high energy physics experiments, visualization helps detector design, data quality monitoring, offline data processing, and has…

Data Analysis, Statistics and Probability · Physics 2024-07-08 Zhi-Jun Li , Ming-Kuan Yuan , Yun-Xuan Song , Yan-Gu Li , Jing-Shu Li , Sheng-Sen Sun , Xiao-Long Wang , Zheng-Yun You , Ya-Jun Mao

Post hoc explanation methods, such as LIME and SHAP, provide interpretable insights into black-box classifiers and are increasingly used to assess model biases and generalizability. However, these methods are vulnerable to adversarial…

Machine Learning · Computer Science 2025-08-18 Sam Chauhan , Estelle Duguet , Karthik Ramakrishnan , Hugh Van Deventer , Jack Kruger , Ranjan Subbaraman

With the advancement of technology for artificial intelligence (AI) based solutions and analytics compute engines, machine learning (ML) models are getting more complex day by day. Most of these models are generally used as a black box…

Machine Learning · Computer Science 2022-10-11 P. Sai Ram Aditya , Mayukha Pal
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