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The extraction of lung lesion information from clinical and medical imaging reports is crucial for research on and clinical care of lung-related diseases. Large language models (LLMs) can be effective at interpreting unstructured text in…

Computation and Language · Computer Science 2024-11-18 Diya Li , Asim Kadav , Aijing Gao , Rui Li , Richard Bourgon

Efficient materials discovery requires reducing costly first-principles calculations for training machine-learned interatomic potentials (MLIPs). We develop an active learning (AL) framework that iteratively selects informative structures…

Machine Learning · Computer Science 2026-01-22 Mohammed Azeez Khan , Aaron D'Souza , Vijay Choyal

Large language models (LLMs) are increasingly used to extract structured information from free-text clinical records, but prior work often focuses on single tasks, limited models, and English-language reports. We evaluated 15 open-weight…

Extracting structured information from unstructured text is crucial for modeling real-world processes, but traditional schema mining relies on semi-structured data, limiting scalability. This paper introduces schema-miner, a novel tool that…

Large Language Models (LLMs) are trained on vast amounts of data, most of which is automatically scraped from the internet. This data includes encyclopedic documents that harbor a vast amount of general knowledge (e.g., Wikipedia) but also…

Large language models (LLMs) have shown impressive performance on general-purpose tasks, yet adapting them to specific domains remains challenging due to the scarcity of high-quality domain data. Existing data synthesis tools often struggle…

Computation and Language · Computer Science 2025-07-08 Ziyang Miao , Qiyu Sun , Jingyuan Wang , Yuchen Gong , Yaowei Zheng , Shiqi Li , Richong Zhang

The progress in text summarization techniques has been remarkable. However the task of accurately extracting and summarizing necessary information from highly specialized documents such as research papers has not been sufficiently…

Computation and Language · Computer Science 2024-09-12 Yuya Fujisaki , Shiro Takagi , Hideki Asoh , Wataru Kumagai

Automated knowledge extraction from scientific literature can potentially accelerate materials discovery. We have investigated an approach for extracting synthesis protocols for reticular materials from scientific literature using large…

Ensuring that Large Language Models (LLMs) generate text representative of diverse sub-populations is essential, particularly when key concepts related to under-represented groups are scarce in the training data. We address this challenge…

Computation and Language · Computer Science 2024-12-17 Sabit Hassan , Anthony Sicilia , Malihe Alikhani

Medical information extraction consists of a group of natural language processing (NLP) tasks, which collaboratively convert clinical text to pre-defined structured formats. Current state-of-the-art (SOTA) NLP models are highly integrated…

Computation and Language · Computer Science 2022-03-09 Enwei Zhu , Qilin Sheng , Huanwan Yang , Jinpeng Li

We present a freely available, genre-balanced English web corpus totaling 4M tokens and featuring a large number of high-quality automatic annotation layers, including dependency trees, non-named entity annotations, coreference resolution,…

Computation and Language · Computer Science 2020-06-19 Luke Gessler , Siyao Peng , Yang Liu , Yilun Zhu , Shabnam Behzad , Amir Zeldes

Neural abstractive text summarization (NATS) has received a lot of attention in the past few years from both industry and academia. In this paper, we introduce an open-source toolkit, namely LeafNATS, for training and evaluation of…

Computation and Language · Computer Science 2019-06-05 Tian Shi , Ping Wang , Chandan K. Reddy

Recently, the impressive performance of large language models (LLMs) on a wide range of tasks has attracted an increasing number of attempts to apply LLMs in drug discovery. However, molecule optimization, a critical task in the drug…

Quantitative Methods · Quantitative Biology 2024-01-22 Geyan Ye , Xibao Cai , Houtim Lai , Xing Wang , Junhong Huang , Longyue Wang , Wei Liu , Xiangxiang Zeng

A comprehensive database of magnetic materials is valuable for researching the properties of magnetic materials and discovering new ones. This article introduces a novel workflow that leverages large language models for extracting key…

Materials Science · Physics 2024-01-12 Yibo Zhang , Suman Itani , Kamal Khanal , Emmanuel Okyere , Gavin Smith , Koichiro Takahashi , Jiadong Zang

Missing data imputation is a critical challenge in various domains, such as healthcare and finance, where data completeness is vital for accurate analysis. Large language models (LLMs), trained on vast corpora, have shown strong potential…

Machine Learning · Computer Science 2025-08-26 Xinrui He , Yikun Ban , Jiaru Zou , Tianxin Wei , Curtiss B. Cook , Jingrui He

The design of sustainable materials requires access to materials performance and sustainability data from literature corpus in an organized, structured and automated manner. Natural language processing approaches, particularly large…

Large Language Models (LLMs) continue to advance natural language processing with their ability to generate human-like text across a range of tasks. Despite the remarkable success of LLMs in Natural Language Processing (NLP), their…

Computation and Language · Computer Science 2025-07-08 Walid Mohamed Aly , Taysir Hassan A. Soliman , Amr Mohamed AbdelAziz

Pre-trained on extensive text and image corpora, current Multi-Modal Large Language Models (MLLM) have shown strong capabilities in general visual reasoning tasks. However, their performance is still lacking in physical domains that require…

Artificial Intelligence · Computer Science 2025-07-04 Erle Zhu , Yadi Liu , Zhe Zhang , Xujun Li , Jin Zhou , Xinjie Yu , Minlie Huang , Hongning Wang

Although many studies have investigated and reduced hallucinations in large language models (LLMs) for single-document tasks, research on hallucination in multi-document summarization (MDS) tasks remains largely unexplored. Specifically, it…

Computation and Language · Computer Science 2025-04-29 Catarina G. Belem , Pouya Pezeshkpour , Hayate Iso , Seiji Maekawa , Nikita Bhutani , Estevam Hruschka

Large Language Model (LLM) pre-training exhausts an ever growing compute budget, yet recent research has demonstrated that careful document selection enables comparable model quality with only a fraction of the FLOPs. Inspired by efforts…

Computation and Language · Computer Science 2024-06-10 Xiang Kong , Tom Gunter , Ruoming Pang