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We study coupled dynamics on networks using symbolic dynamics. The symbolic dynamics is defined by dividing the state space into a small number of regions (typically 2), and considering the relative frequencies of the transitions between…

Chaotic Dynamics · Physics 2009-11-11 Sarika Jalan , Juergen Jost , Fatihcan Atay

Link prediction is an important learning task for graph-structured data. In this paper, we propose a novel topological approach to characterize interactions between two nodes. Our topological feature, based on the extended persistent…

Machine Learning · Computer Science 2021-06-15 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Chao Chen

We study the effect of topology variation on the dynamic behavior of a system with local update rules. We implement one-dimensional binary cellular automata on graphs with various topologies by formulating two sets of degree-dependent…

Statistical Mechanics · Physics 2009-11-11 Carsten Marr , Marc-Thorsten Huett

Synchrony patterns describe network states in which nodes of a coupled dynamical system are grouped into clusters based on synchronization between nodes. Beyond simple synchrony, synchronized clusters may also exhibit active or inactive…

Adaptation and Self-Organizing Systems · Physics 2026-03-12 Anil Kumar , V. K. Chandrasekar , D. V. Senthilkumar

We propose a novel approach to investigate the brain mechanisms that support coordination of behavior between individuals. Brain states in single individuals defined by the patterns of functional connectivity between brain regions are used…

Neurons and Cognition · Quantitative Biology 2025-01-06 Italo Ivo Lima Dias Pinto , Zhibin Zhou , Javier O. Garcia , Ramesh Srinivasan

Topological data analysis (TDA) approaches are becoming increasingly popular for studying the dependence patterns in multivariate time series data. In particular, various dependence patterns in brain networks may be linked to specific tasks…

Methodology · Statistics 2025-12-08 Anass El Yaagoubi Bourakna , Moo K. Chung , Hernando Ombao

We study the topological properties of magnon excitations in three-dimensional antiferromagnets, where the ground state configuration is invariant under time-reversal followed by space-inversion ($PT$-symmetry). We prove that Dirac points…

Mesoscale and Nanoscale Physics · Physics 2017-12-20 Kangkang Li , Chenyuan Li , Jiangping Hu , Yuan Li , Chen Fang

Recent progress in experimental techniques has enabled us to quantitatively study stochastic and flexible behavior of biological systems. For example, gene regulatory networks perform stochastic information processing and their…

Statistical Mechanics · Physics 2018-06-21 Shun Otsubo , Takahiro Sagawa

We comprehensively studied the morphology of the self-organized effective network structures that form in simple coupled maps with interelement synchronization-dependent connection changes. Based on the parameter values, the spontaneous…

Adaptation and Self-Organizing Systems · Physics 2022-02-09 Taito Nakanishi , Masashi Fujii , Akinori Awazu

The recent discovery of universal principles underlying many complex networks occurring across a wide range of length scales in the biological world has spurred physicists in trying to understand such features using techniques from…

Biological Physics · Physics 2015-05-13 Sitabhra Sinha

Our goal in this paper is to leverage the potential of the topological signal processing (TSP) framework for analyzing brain networks. Representing brain data as signals over simplicial complexes allows us to capture higher-order…

Signal Processing · Electrical Eng. & Systems 2025-04-11 Breno C. Bispo , Stefania Sardellitti , Fernando A. N. Santos , Juliano B. Lima

Attractor dynamics are a fundamental computational motif in neural circuits, supporting diverse cognitive functions through stable, self-sustaining patterns of neural activity. In these lecture notes, we review four key examples that…

Neurons and Cognition · Quantitative Biology 2026-01-30 Tala Fakhoury , Elia Turner , Sushrut Thorat , Athena Akrami

Links in many real-world networks activate and deactivate in correspondence to the sporadic interactions between the elements of the system. The activation patterns may be irregular or bursty and play an important role on the dynamics of…

Physics and Society · Physics 2017-02-03 Oriol Artime , Jose J. Ramasco , Maxi San Miguel

Complex networks play a fundamental role in understanding phenomena from the collective behavior of spins, neural networks, and power grids to the spread of diseases. Topological phenomena in such networks have recently been exploited to…

Topological invariants play a key role in the characterization of topological states. Due to the existence of exceptional points, it is a great challenge to detect topological invariants in non-Hermitian systems. We put forward a dynamic…

Quantum Physics · Physics 2020-04-22 Bo Zhu , Yongguan Ke , Honghua Zhong , Chaohong Lee

Neural feedback-triads consisting of two feedback loops with a non-reciprocal lateral connection from one loop to the other are ubiquitous in the brain. We show analytically that the dynamics of this network topology are determined by two…

Neurons and Cognition · Quantitative Biology 2009-03-17 M. S. Caudill , S. F. Brandt , Z. Nussinov , R. Wessel

We discuss the ability of a network with non linear relays and chaotic dynamics to transmit signals, on the basis of a linear response theory developed by Ruelle \cite{Ruelle} for dissipative systems. We show in particular how the dynamics…

Chaotic Dynamics · Physics 2009-11-11 B. Cessac , J. A. Sepulchre

The asymptotic behaviour of dynamical processes in networks can be expressed as a function of spectral properties of the corresponding adjacency and Laplacian matrices. Although many theoretical results are known for the spectra of…

Physics and Society · Physics 2018-05-29 Thomas K. DM. Peron , Peng Ji , Jürgen Kurths , Francisco A. Rodrigues

Neuromorphic networks can be described in terms of coarse-grained variables, where emergent sustained behaviours spontaneously arise if stochasticity is properly taken in account. For example it has been recently found that a directed…

Adaptation and Self-Organizing Systems · Physics 2020-01-23 Ilenia Apicella , Daniel Maria Busiello , Silvia Scarpetta , Samir Suweis

Spreading phenomena essentially underlie the dynamics of various natural and technological networked systems, yet how spatiotemporal propagation patterns emerge from such networks remains largely unknown. Here we propose a novel approach…

Physics and Society · Physics 2024-03-12 Xiaozhu Zhang , Dirk Witthaut , Marc Timme