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Computational neuroscience studies that have examined human visual system through functional magnetic resonance imaging (fMRI) have identified a model where the mammalian brain pursues two distinct pathways (for recognition of biological…

Computer Vision and Pattern Recognition · Computer Science 2015-09-15 Bardia Yousefi , C. K. Loo

Working memory (WM) allows information to be stored and manipulated over short time scales. Performance on WM tasks is thought to be supported by the frontoparietal system (FPS), the default mode system (DMS), and interactions between them.…

Neurons and Cognition · Quantitative Biology 2020-09-09 Andrew C. Murphy , Maxwell A. Bertolero , Lia Papadopoulos , David M. Lydon-Staley , Danielle S. Bassett

We propose an end-to-end deep neural encoder-decoder model to encode and decode brain activity in response to naturalistic stimuli using functional magnetic resonance imaging (fMRI) data. Leveraging temporally correlated input from…

Computer Vision and Pattern Recognition · Computer Science 2025-07-17 Florian David , Michael Chan , Elenor Morgenroth , Patrik Vuilleumier , Dimitri Van De Ville

A major goal of computational neuroscience has been to explain how the primate ventral visual stream (VVS) transforms visual input into temporally evolving neural representations that support robust visual perception. Historically, most…

Neurons and Cognition · Quantitative Biology 2026-01-21 Matteo Dunnhofer , Maren Wehrheim , Hamidreza Ramezanpour , Sabine Muzellec , Kohitij Kar

This paper explores the discrete Dynamic Causal Modeling (DDCM) and its relationship with Directed Information (DI). We prove the conditional equivalence between DDCM and DI in characterizing the causal relationship between two brain…

Neurons and Cognition · Quantitative Biology 2017-09-20 Zhe Wang , Yu Zheng , David C. Zhu , Jian Ren , Tongtong Li

Previous group activity recognition approaches were limited to reasoning using human relations or finding important subgroups and tended to ignore indispensable group composition and human-object interactions. This absence makes a partial…

Computer Vision and Pattern Recognition · Computer Science 2023-05-10 Youliang Zhang , Zhuo Zhou , Wenxuan Liu , Danni Xu , Zheng Wang

Effective connectivity analysis in functional magnetic resonance imaging (fMRI) studies directional interactions among brain regions and experimental stimuli. Dynamic causal modeling (DCM) is a widely used method to estimate effective…

Methodology · Statistics 2026-05-15 Kaitlyn R. Fales , Hyebin Song , Nicole A. Lazar

In this paper, we present results of processing Dynamic Vision Sensor (DVS) recordings of visual patterns with a retinal model based on foveal-pit inspired Difference of Gaussian (DoG) filters. A DVS sensor was stimulated with varying…

Computer Vision and Pattern Recognition · Computer Science 2021-06-01 Shriya T. P. Gupta , Pablo Linares-Serrano , Basabdatta Sen Bhattacharya , Teresa Serrano-Gotarredona

The neural activity in the visual processing is influenced by both external stimuli and internal brain states. Ideally, a neural predictive model should account for both of them. Currently, there are no dynamic encoding models that…

Neurons and Cognition · Quantitative Biology 2025-11-18 Finn Schmidt , Polina Turishcheva , Suhas Shrinivasan , Fabian H. Sinz

Functional connectivity (FC) between brain regions tracks symptom severity in many neuropsychiatric disorders. Transcranial magnetic stimulation (TMS) directly alters regional activity and indirectly alters FC. Predicting how FC will change…

Neurons and Cognition · Quantitative Biology 2022-08-25 Andrew C. Murphy , Romain Duprat , Theodore D. Satterthwaite , Desmond J. Oathes , Dani S. Bassett

Brain networks can be defined and explored through their connectivity. Here, we analyzed the relationship between structural connectivity (SC) across 2,514 regions that cover the entire brain and brainstem, and their dynamic functional…

In this study, we adopted visual motion imagery, which is a more intuitive brain-computer interface (BCI) paradigm, for decoding the intuitive user intention. We developed a 3-dimensional BCI training platform and applied it to assist the…

Signal Processing · Electrical Eng. & Systems 2020-05-19 Byoung-Hee Kwon , Ji-Hoon Jeong , Jeong-Hyun Cho , Seong-Whan Lee

Dynamic Causal Modeling (DCM) is a Bayesian framework for inferring on hidden (latent) neuronal states, based on measurements of brain activity. Since its introduction in 2003 for functional magnetic resonance imaging data, DCM has been…

Quantitative Methods · Quantitative Biology 2021-04-08 Inês Pereira , Stefan Frässle , Jakob Heinzle , Dario Schöbi , Cao Tri Do , Moritz Gruber , Klaas E. Stephan

Dynamic Causal Modelling (DCM) is the predominant method for inferring effective connectivity from neuroimaging data. In the 15 years since its introduction, the neural models and statistical routines in DCM have developed in parallel,…

Quantitative Methods · Quantitative Biology 2019-07-15 Peter Zeidman , Amirhossein Jafarian , Nadège Corbin , Mohamed L. Seghier , Adeel Razi , Cathy J. Price , Karl J. Friston

Dynamic functional connectivity (DFC) analysis involves measuring correlated neural activity over time across multiple brain regions. Significant regional correlations among neural signals, such as those obtained from resting-state…

We apply Dynamic Causal Models to electrocorticogram recordings from two macaque monkeys performing a problem-solving task that engages working memory, and induces time-on-task effects. We thus provide a computational account of changes in…

Modelling the dynamics of interactions in a neuronal ensemble is an important problem in functional connectivity research. One popular framework is latent factor models (LFMs), which have achieved notable success in decoding neuronal…

Methodology · Statistics 2023-05-18 Meixi Chen , Martin Lysy , David Moorman , Reza Ramezan

The brain uses positive signals as a means of signaling. Forward interactions in the early visual cortex are also positive, realized by excitatory synapses. Only local interactions also include inhibition. Non-negative matrix factorization…

Machine Learning · Computer Science 2025-03-27 Mahbod Nouri , David Rotermund , Alberto Garcia-Ortiz , Klaus R. Pawelzik

Recent advances in mechanistic interpretability have revealed that large language models (LLMs) develop internal representations corresponding not only to concrete entities but also distinct, human-understandable abstract concepts and…

Machine Learning · Computer Science 2025-12-01 Rio Alexa Fear , Payel Mukhopadhyay , Michael McCabe , Alberto Bietti , Miles Cranmer

We present a didactic introduction to spectral Dynamic Causal Modelling (DCM), a Bayesian state-space modelling approach used to infer effective connectivity from non-invasive neuroimaging data. Spectral DCM is currently the most widely…

Neurons and Cognition · Quantitative Biology 2023-09-07 Leonardo Novelli , Karl Friston , Adeel Razi
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