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Phase-field (PF) modeling is a powerful tool for simulating microstructure evolution. To overcome the high computational cost of PF in solving complex PDEs, machine learning methods such as PINNs, convLSTM have been used to predict PF…

Computational Physics · Physics 2026-01-09 Ao Zhou , Salma Zahran , Chi Chen , Zhengyang Zhang , Yanming Wang

This work presents the network architecture EVP (Enhanced Visual Perception). EVP builds on the previous work VPD which paved the way to use the Stable Diffusion network for computer vision tasks. We propose two major enhancements. First,…

Computer Vision and Pattern Recognition · Computer Science 2023-12-15 Mykola Lavreniuk , Shariq Farooq Bhat , Matthias Müller , Peter Wonka

Proteins are fundamental to biology, executing diverse functions through complex physicochemical interactions, and they hold transformative potential across medicine, materials science, and environmental applications. Protein Language…

Biomolecules · Quantitative Biology 2025-06-11 Logan Hallee , Nikolaos Rafailidis , David B. Bichara , Jason P. Gleghorn

Generative modeling aims to generate new data samples that resemble a given dataset, with diffusion models recently becoming the most popular generative model. One of the main challenges of diffusion models is solving the problem in the…

Numerical Analysis · Mathematics 2025-10-08 Wonjun Lee , Riley C. W. O'Neill , Dongmian Zou , Jeff Calder , Gilad Lerman

Proteins are shaped by gradual evolution under biophysical and functional constraints. Protein language models learn rich evolutionary constraints from large-scale sequences, and discrete diffusion-based protein language models~(\eg, DPLMs)…

Machine Learning · Computer Science 2026-05-14 Xinyou Wang , Liang Hong , Jiasheng Ye , Zaixiang Zheng , Yu Li , Shujian Huang , Quanquan Gu

Recent breakthroughs in vision-language models (VLMs) start a new page in the vision community. The VLMs provide stronger and more generalizable feature embeddings compared to those from ImageNet-pretrained models, thanks to the training on…

Computer Vision and Pattern Recognition · Computer Science 2024-04-05 Jieneng Chen , Qihang Yu , Xiaohui Shen , Alan Yuille , Liang-Chieh Chen

Virtual Try-On (VTON) has seen rapid advancements, providing a strong foundation for generative fashion tasks. However, the inverse problem, Virtual Try-Off (VTOFF)-aimed at reconstructing the canonical garment from a draped-on…

Computer Vision and Pattern Recognition · Computer Science 2026-04-13 Loc-Phat Truong , Meysam Madadi , Sergio Escalera

Designing proteins de novo with tailored structural, physicochemical, and functional properties remains a grand challenge in biotechnology, medicine, and materials science, due to the vastness of sequence space and the complex coupling…

Artificial Intelligence · Computer Science 2025-12-01 Fiona Y. Wang , Di Sheng Lee , David L. Kaplan , Markus J. Buehler

The importance of inference in Machine Learning (ML) has led to an explosive number of different proposals in ML, and particularly in Deep Learning. In an attempt to reduce the complexity of Convolutional Neural Networks, we propose a…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Siddharth Roheda , Hamid Krim

A commonly recurring problem in structural protein studies, is the determination of all heavy atom positions from the knowledge of the central alpha-carbon coordinates. We employ advances in virtual reality to address the problem. The…

Biomolecules · Quantitative Biology 2014-12-30 Xubiao Peng , Alireza Chenani , Shuangwei Hu , Yifan Zhou , Antti J. Niemi

Visual-frame prediction is a pixel-dense prediction task that infers future frames from past frames. Lacking of appearance details, low prediction accuracy and high computational overhead are still major problems with current models or…

Computer Vision and Pattern Recognition · Computer Science 2022-11-16 Chaofan Ling , Junpei Zhong , Weihua Li

Diffusion models (DMs) excel in photorealism, image editing, and solving inverse problems, aided by classifier-free guidance and image inversion techniques. However, rectified flow models (RFMs) remain underexplored for these tasks.…

Computer Vision and Pattern Recognition · Computer Science 2024-12-03 Maitreya Patel , Song Wen , Dimitris N. Metaxas , Yezhou Yang

Metasurfaces have shown promising potentials in shaping optical wavefronts while remaining compact compared to bulky geometric optics devices. Design of meta-atoms, the fundamental building blocks of metasurfaces, relies on trial-and-error…

De novo functional protein design aims to generate protein sequences that realize specified biochemical functions without relying on evolutionary templates, enabling broad applications in biotechnology and medicine. Existing approaches…

Quantitative Methods · Quantitative Biology 2026-05-05 Xinrui Chen , Yizhen Luo , Siqi Fan , Zaiqing Nie

Pretraining language models with next-token prediction on massive text corpora has delivered phenomenal zero-shot, few-shot, transfer learning and multi-tasking capabilities on both generative and discriminative language tasks. Motivated by…

Computer Vision and Pattern Recognition · Computer Science 2022-06-07 Jiahui Yu , Xin Li , Jing Yu Koh , Han Zhang , Ruoming Pang , James Qin , Alexander Ku , Yuanzhong Xu , Jason Baldridge , Yonghui Wu

In recent years, State Space Models (SSMs) with efficient hardware-aware designs, known as the Mamba deep learning models, have made significant progress in modeling long sequences such as language understanding. Therefore, building…

Computer Vision and Pattern Recognition · Computer Science 2025-09-26 Juntao Zhang , Shaogeng Liu , Jun Zhou , Kun Bian , You Zhou , Jianning Liu , Pei Zhang , Bingyan Liu

Evolutionary computation methods have been successfully applied to neural networks since two decades ago, while those methods cannot scale well to the modern deep neural networks due to the complicated architectures and large quantities of…

Neural and Evolutionary Computing · Computer Science 2019-03-12 Yanan Sun , Bing Xue , Mengjie Zhang , Gary G. Yen

Extensive work has demonstrated the effectiveness of Vision Transformers. The plain Vision Transformer tends to obtain multi-scale features by selecting fixed layers, or the last layer of features aiming to achieve higher performance in…

Computer Vision and Pattern Recognition · Computer Science 2023-05-10 Fangjian Lin , Yizhe Ma , Shengwei Tian

Protein design aims to compose amino-acid sequences that fold into stable three-dimensional structures while satisfying targeted functional properties. The field is increasingly shifting toward vibe protein design, where a single model is…

Accurate localization of proteins from fluorescence microscopy images is challenging due to the inter-class similarities and intra-class disparities introducing grave concerns in addressing multi-class classification problems. Conventional…

Computer Vision and Pattern Recognition · Computer Science 2021-10-11 Muhammad Tahir , Saeed Anwar , Ajmal Mian , Abdul Wahab Muzaffar