Related papers: HyperNetX: A Python package for modeling complex n…

Graph Neural Networks (GNNs) are widely used in many modern applications, necessitating explanations for their decisions. However, the complexity of GNNs makes it difficult to explain predictions. Even though several methods have been…

Network models facilitate inexpensive simulations, but require careful handling of bifurcation conditions. We here present the graphnics library, which combines FEniCS with NetworkX to facilitate network simulations using the finite element…

We present a new Python library called vaex, to handle extremely large tabular datasets, such as astronomical catalogues like the Gaia catalogue, N-body simulations or any other regular datasets which can be structured in rows and columns.…

Graphs are central to modeling relationships in scientific computing, data analysis, and AI/ML, but their growing scale can exceed the memory and compute capacity of single nodes, requiring distributed solutions. Existing distributed graph…

Deep Neural Networks (DNNs) can be represented as graphs whose links and vertices iteratively process data and solve tasks sub-optimally. Complex Network Theory (CNT), merging statistical physics with graph theory, provides a method for…

Modeling heterogeneity by extraction and exploitation of high-order information from heterogeneous information networks (HINs) has been attracting immense research attention in recent times. Such heterogeneous network embedding (HNE)…

TGraphX presents a novel paradigm in deep learning by unifying convolutional neural networks (CNNs) with graph neural networks (GNNs) to enhance visual reasoning tasks. Traditional CNNs excel at extracting rich spatial features from images…

Deep learning in hyperbolic space is quickly gaining traction in the fields of machine learning, multimedia, and computer vision. Deep networks commonly operate in Euclidean space, implicitly assuming that data lies on regular grids. Recent…

Graph mining has become crucial in fields such as social science, finance, and cybersecurity. Many large-scale real-world networks exhibit both heterogeneity, where multiple node and edge types exist in the graph, and heterophily, where…

Many networks can be characterised by the presence of communities, which are groups of units that are closely linked. Identifying these communities can be crucial for understanding the system's overall function. Recently, hypergraphs have…

SPARKX is an open-source Python package developed to analyze simulation data from heavy-ion collision experiments. By offering a comprehensive suite of tools, SPARKX simplifies data analysis workflows, supports multiple formats such as…

Graph Neural Networks (GNNs) have recently shown to be powerful tools for representing and analyzing graph data. So far GNNs is becoming an increasingly critical role in software engineering including program analysis, type inference, and…

ANNdotNET is an open source project for deep learning written in C# with ability to create, train, evaluate and export deep learning models. The project consists of the Graphical User Interface module capable to visually prepare data, fine…

The GraphBLAS high performance library standard has yielded capabilities beyond enabling graph algorithms to be readily expressed in the language of linear algebra. These GraphBLAS capabilities enable new performant ways of thinking about…

Relational databases (RDBs) are ubiquitous in enterprise and real-world applications. Flattening the database poses challenges for deep learning models that rely on fixed-size input representations to capture relational semantics from the…

HIPSTER (Heavily Ionising Particle Standard Toolkit for Event Recognition) is an open source Python package designed to facilitate the use of TensorFlow in a high energy physics analysis context. The core functionality of the software is…

This paper describes the design and use of the graph-based parsing framework and toolkit UniParse, released as an open-source python software package. UniParse as a framework novelly streamlines research prototyping, development and…

Hybrid visualizations mix different metaphors in a single layout of a network. In particular, the popular NodeTrix model, introduced by Henry, Fekete, and McGuffin in 2007, combines node-link diagrams and matrix-based representations to…

Biological and cellular systems are often modeled as graphs in which vertices represent objects of interest (genes, proteins, drugs) and edges represent relational ties among these objects (binds-to, interacts-with, regulates). This…

Graph Neural Networks (GNNs) have recently caught great attention and achieved significant progress in graph-level applications. In this paper, we propose a framework for graph neural networks with multiresolution Haar-like wavelets, or…