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Accurate recognition of biomedical named entities is critical for medical information extraction and knowledge discovery. However, existing methods often struggle with nested entities, entity boundary ambiguity, and cross-lingual…

Computation and Language · Computer Science 2025-10-13 Tengxiao Lv , Ling Luo , Juntao Li , Yanhua Wang , Yuchen Pan , Chao Liu , Yanan Wang , Yan Jiang , Huiyi Lv , Yuanyuan Sun , Jian Wang , Hongfei Lin

Cross-lingual biomedical entity linking (BEL) maps mentions in any language to unique identifiers in a biomedical knowledge base (KB), supporting clinical and biomedical NLP applications. However, expert-annotated training data for BEL are…

Computation and Language · Computer Science 2026-05-28 Yi Wang , Corina Dima , Liangyu Zhong , Steffen Staab

Despite their popularity in non-English NLP, multilingual language models often underperform monolingual ones due to inter-language competition for model parameters. We propose Cross-lingual Expert Language Models (X-ELM), which mitigate…

Computation and Language · Computer Science 2024-10-10 Terra Blevins , Tomasz Limisiewicz , Suchin Gururangan , Margaret Li , Hila Gonen , Noah A. Smith , Luke Zettlemoyer

State-of-the-art deep learning entity linking methods rely on extensive human-labelled data, which is costly to acquire. Current datasets are limited in size, leading to inadequate coverage of biomedical concepts and diminished performance…

Computation and Language · Computer Science 2024-10-23 Pedro Ruas , Fernando Gallego , Francisco J. Veredas , Francisco M. Couto

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network…

Information Retrieval · Computer Science 2018-10-09 Xuan Wang , Yu Zhang , Xiang Ren , Yuhao Zhang , Marinka Zitnik , Jingbo Shang , Curtis Langlotz , Jiawei Han

Injecting external domain-specific knowledge (e.g., UMLS) into pretrained language models (LMs) advances their capability to handle specialised in-domain tasks such as biomedical entity linking (BEL). However, such abundant expert knowledge…

Computation and Language · Computer Science 2021-06-01 Fangyu Liu , Ivan Vulić , Anna Korhonen , Nigel Collier

Multi-table entity matching (MEM) addresses the limitations of dual-table approaches by enabling simultaneous identification of equivalent entities across multiple data sources without unique identifiers. However, existing methods relying…

Computation and Language · Computer Science 2026-04-24 Yingkai Tang , Taoyu Su , Wenyuan Zhang , Xiaoyang Guo , Tingwen Liu

Recent advances in multimodal large language models have enabled unified processing of visual and textual inputs, offering promising applications in general-purpose medical AI. However, their ability to generalize compositionally across…

Computer Vision and Pattern Recognition · Computer Science 2025-11-17 Pooja Singh , Siddhant Ujjain , Tapan Kumar Gandhi , Sandeep Kumar

Large language models (LLMs) are transforming the ways the general public accesses and consumes information. Their influence is particularly pronounced in pivotal sectors like healthcare, where lay individuals are increasingly appropriating…

Computation and Language · Computer Science 2023-10-24 Yiqiao Jin , Mohit Chandra , Gaurav Verma , Yibo Hu , Munmun De Choudhury , Srijan Kumar

Expressing universal semantics common to all languages is helpful in understanding the meanings of complex and culture-specific sentences. The research theme underlying this scenario focuses on learning universal representations across…

Computation and Language · Computer Science 2023-10-27 Ping Guo , Xiangpeng Wei , Yue Hu , Baosong Yang , Dayiheng Liu , Fei Huang , Jun Xie

For languages with no annotated resources, transferring knowledge from rich-resource languages is an effective solution for named entity recognition (NER). While all existing methods directly transfer from source-learned model to a target…

Computation and Language · Computer Science 2020-07-16 Qianhui Wu , Zijia Lin , Guoxin Wang , Hui Chen , Börje F. Karlsson , Biqing Huang , Chin-Yew Lin

With the increasing application of large language models (LLMs) in the medical domain, evaluating these models' performance using benchmark datasets has become crucial. This paper presents a comprehensive survey of various benchmark…

Multimodal Entity Linking (MEL) is a crucial task that aims at linking ambiguous mentions within multimodal contexts to the referent entities in a multimodal knowledge base, such as Wikipedia. Existing methods focus heavily on using complex…

Artificial Intelligence · Computer Science 2024-08-22 Liu Qi , He Yongyi , Lian Defu , Zheng Zhi , Xu Tong , Liu Che , Chen Enhong

The training of large language models (LLMs) necessitates substantial data and computational resources, and updating outdated LLMs entails significant efforts and resources. While numerous model editing techniques (METs) have emerged to…

Computation and Language · Computer Science 2024-02-06 Himanshu Beniwal , Kowsik Nandagopan D , Mayank Singh

Cross-lingual Entity Linking (XEL) aims to ground entity mentions written in any language to an English Knowledge Base (KB), such as Wikipedia. XEL for most languages is challenging, owing to limited availability of resources as…

Computation and Language · Computer Science 2018-09-21 Shyam Upadhyay , Nitish Gupta , Dan Roth

Multimodal Entity Linking (MEL) aims to associate textual and visual mentions with entities in a multimodal knowledge graph. Despite its importance, current methods face challenges such as incomplete contextual information, coarse…

Computation and Language · Computer Science 2025-08-25 Fang Wang , Tianwei Yan , Zonghao Yang , Minghao Hu , Jun Zhang , Zhunchen Luo , Xiaoying Bai

Despite significant advancements in medical vision-language pre-training, existing methods have largely overlooked the inherent linguistic complexity and imbalanced isssue within medical reports, as well as the complex cross-modality…

Computer Vision and Pattern Recognition · Computer Science 2025-06-10 Rongsheng Wang , Qingsong Yao , Zihang Jiang , Haoran Lai , Zhiyang He , Xiaodong Tao , S. Kevin Zhou

Cross-lingual pre-training has achieved great successes using monolingual and bilingual plain text corpora. However, most pre-trained models neglect multilingual knowledge, which is language agnostic but comprises abundant cross-lingual…

Computation and Language · Computer Science 2022-04-26 Xiaoze Jiang , Yaobo Liang , Weizhu Chen , Nan Duan

Motivation: Biomedical named-entity normalization involves connecting biomedical entities with distinct database identifiers in order to facilitate data integration across various fields of biology. Existing systems for biomedical named…

Computation and Language · Computer Science 2023-10-24 Zainab Awan , Tim Kahlke , Peter Ralph , Paul Kennedy

Clinical studies often require understanding elements of a patient's narrative that exist only in free text clinical notes. To transform notes into structured data for downstream use, these elements are commonly extracted and normalized to…

Computation and Language · Computer Science 2020-08-03 Monica Agrawal , Chloe O'Connell , Yasmin Fatemi , Ariel Levy , David Sontag
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