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Contemporary software projects often utilize a README.md to share crucial information such as installation and usage examples related to their software. Furthermore, these files serve as an important source of updated and useful…

Software Engineering · Computer Science 2018-02-28 Shohei Ikeda , Akinori Ihara , Raula Gaikovina Kula , Kenichi Matsumoto

Machine Learning (ML) research publications commonly provide open-source implementations on GitHub, allowing their audience to replicate, validate, or even extend machine learning algorithms, data sets, and metadata. However, thus far…

Software Engineering · Computer Science 2022-12-14 Aaditya Bhatia , Ellis E. Eghan , Manel Grichi , William G. Cavanagh , Zhen Ming , Jiang , Bram Adams

Modern software systems have transitioned from purely code-based architectures to AI-integrated systems where pre-trained models (PTMs) serve as permanent dependencies. However, while the evolution of traditional software libraries is…

Software Engineering · Computer Science 2026-04-21 Peerachai Banyongrakkul , Mansooreh Zahedi , Christoph Treude , Haoyu Gao , Patanamon Thongtanunam

Third-party package usage has become a common practice in contemporary software development. Developers often face different challenges, including choosing the right libraries, installing errors, discrepancies, setting up the environment,…

Software Engineering · Computer Science 2022-03-01 Syful Islam , Dong Wang , Raula Gaikovina Kula , Takashi Ishio , Kenichi Matsumoto

One of the most powerful features of R is its infrastructure for contributed code. The built-in package manager and complementary repositories provide a great system for development and exchange of code, and have played an important role in…

Software Engineering · Computer Science 2013-11-04 Jeroen Ooms

Similarity measures are fundamental tools for quantifying the alignment between artificial and biological systems. However, the diversity of similarity measures and their varied naming and implementation conventions makes it challenging to…

Neurons and Cognition · Quantitative Biology 2025-09-09 Nathan Cloos , Guangyu Robert Yang , Christopher J. Cueva

Maintaining consistency between code and documentation is a crucial yet frequently overlooked aspect of software development. Even minor mismatches can confuse API users, introduce new bugs, and increase overall maintenance effort. This…

Software Engineering · Computer Science 2026-04-22 Tobias Kiecker , Jan Arne Sparka , Martin Reuter , Albert Ziegler , Lars Grunske

Software developers typically rely upon a large network of dependencies to build their applications. For instance, the NPM package repository contains over 3 million packages and serves tens of billions of downloads weekly. Understanding…

Software Engineering · Computer Science 2023-08-25 Donald Pinckney , Federico Cassano , Arjun Guha , Jonathan Bell

As part of a research on a novel in-process multiprogramming-language interoperability system, this study investigates the interoperability and usage of multiple programming languages within a large dataset of GitHub projects and Stack…

Programming Languages · Computer Science 2024-11-14 Tsvi Cherny-Shahar , Amiram Yehudai

Online collaboration platforms such as GitHub have provided software developers with the ability to easily reuse and share code between repositories. With clone-and-own and forking becoming prevalent, maintaining these shared files is…

Software Engineering · Computer Science 2021-02-15 Hideaki Hata , Raula Gaikovina Kula , Takashi Ishio , Christoph Treude

In open-source projects, anyone can contribute, so it is important to have an active continuous integration and continuous delivery (CI/CD) pipeline in addition to a protocol for reporting security concerns, especially in projects that are…

Software Engineering · Computer Science 2023-10-16 Jessy Ayala , Joshua Garcia

Choosing an appropriate software development technology (e.g., programming language) is challenging due to the proliferation of diverse options. The selection of inappropriate technologies for development may have a far-reaching effect on…

Software Engineering · Computer Science 2023-12-07 Saikat Mondal , Debajyoti Mondal , Chanchal K. Roy

Despite the widespread use of Transformer-based text embedding models in NLP tasks, surprising 'sticky tokens' can undermine the reliability of embeddings. These tokens, when repeatedly inserted into sentences, pull sentence similarity…

Computation and Language · Computer Science 2025-07-25 Kexin Chen , Dongxia Wang , Yi Liu , Haonan Zhang , Wenhai Wang

In recent years, the explosion of malware and extensive code reuse have formed complex evolutionary connections among malware specimens. The rapid pace of development makes it challenging for existing studies to characterize recent…

Cryptography and Security · Computer Science 2025-12-02 Bojing Li , Duo Zhong , Dharani Nadendla , Gabriel Terceros , Prajna Bhandar , Raguvir S , Charles Nicholas

Source code repositories allow developers to manage multiple versions (or branches) of a software system. Pull-requests are used to modify a branch, and backporting is a regular activity used to port changes from a current development…

Software Engineering · Computer Science 2022-04-11 Debasish Chakroborti , Kevin A. Schneider , Chanchal K. Roy

Repository-level code completion is challenging as it involves complicated contexts from multiple files in the repository. To date, researchers have proposed two technical categories to enhance LLM-based repository-level code completion,…

Software Engineering · Computer Science 2024-06-17 Junwei Liu , Yixuan Chen , Mingwei Liu , Xin Peng , Yiling Lou

The Log4j-Core vulnerability, known as Log4Shell, exposed significant challenges to dependency management in software ecosystems. When a critical vulnerability is disclosed, it is imperative that dependent packages quickly adopt patched…

Migration guides are a form of software documentation that helps developers address breaking changes introduced in library version updates. Prior studies have examined documents such as release notes, API reference manuals, and patch notes.…

Software Engineering · Computer Science 2026-05-20 Takahiro Monno , Kazumasa Shimari , Tetsuya Kanda , Kazuma Yamasaki , Kenichi Matsumoto

Packaging software into containers is becoming a common practice when deploying services in cloud and other environments. Docker images are one of the most popular container technologies for building and deploying containers. A container…

Software Engineering · Computer Science 2019-02-27 Ahmed Zerouali , Tom Mens , Gregorio Robles , Jesus Gonzalez-Barahona

Blockchain, as a distributed ledger technology, becomes increasingly popular, especially for enabling valuable cryptocurrencies and smart contracts. However, the blockchain software systems inevitably have many bugs. Although bugs in smart…

Cryptography and Security · Computer Science 2023-02-22 Xiao Yi , Daoyuan Wu , Lingxiao Jiang , Yuzhou Fang , Kehuan Zhang , Wei Zhang