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Fish schooling is often modeled with self-propelled particles subject to phenomenological behavioral rules. Although fish are known to sense and exploit flow features, these models usually neglect hydrodynamics. Here, we propose a novel…

Biological Physics · Physics 2018-05-16 Audrey Filella , François Nadal , Clément Sire , Eva Kanso , Christophe Eloy

Biological microswimmers such as bacteria and sperm cells often encounter complex biological fluid environments. Here we use the well-known squirmer microswimmer model to show the importance of the local fluid microstructure and…

Soft Condensed Matter · Physics 2023-07-19 Andreas Zöttl

Oceanic turbulence influences the transport and mixing of freshwater, heat, nutrients, and other biogeochemical tracers. It also has broader implications for oceanic and atmospheric circulations. Tides contribute substantially to the…

Fluid Dynamics · Physics 2025-09-01 H. M. Aravind , Pranav Puthan , Sutanu Sarkar , Sophia Merrifield , Eric Terrill

The self-propelled motion of microscopic bodies immersed in a fluid medium is studied using molecular dynamics simulation. The advantage of the atomistic approach is that the detailed level of description allows complete freedom in…

Soft Condensed Matter · Physics 2007-12-06 D. C. Rapaport

We review recent work on active colloids or swimmers, such as self-propelled microorganisms, phoretic colloidal particles, and artificial micro-robotic systems, moving in fluid-like environments. These environments can be water-like and…

Biological Physics · Physics 2016-02-09 Alison E. Patteson , Arvind Gopinath , Paulo E. Arratia

Exploring bodies of water on their surface allows robots to efficiently communicate and harvest energy from the sun. On the water surface, however, robots often face highly unstructured environments, cluttered with plant matter, animals,…

Unicellular microscopic organisms living in aqueous environments outnumber all other creatures on Earth. A large proportion of them are able to self-propel in fluids with a vast diversity of swimming gaits and motility patterns. In this…

Biological Physics · Physics 2021-07-14 Marcos F. Velho Rodrigues , Maciej Lisicki , Eric Lauga

Populations of swimming microorganisms produce fluid motions that lead to dramatically enhanced diffusion of tracer particles. Using simulations of suspensions of swimming particles in a periodic domain, we capture this effect and show that…

Soft Condensed Matter · Physics 2008-07-22 Patrick T. Underhill , Juan P. Hernández-Ortiz , Michael D. Graham

Several recent experiments suggest that rather generally the diffusion of enzymes may be augmented through their activity. We demonstrate that such swimming motility can emerge from the interplay between the enzyme energy landscape and the…

Soft Condensed Matter · Physics 2015-10-08 Xiaoyu Bai , Peter G. Wolynes

Complex ocean systems such as the Antarctic Circumpolar Current play key roles in the climate, and current models predict shifts in their strength and area under climate change. However, the physical processes underlying these changes are…

Atmospheric and Oceanic Physics · Physics 2023-12-19 William Yik , Maike Sonnewald , Mariana C. A. Clare , Redouane Lguensat

We prove results on existence and uniqueness of solutions of a system of equations modeling the evolution of a generalized bioconvective flow. The mathematical model considered in the present work describes the convective motion generated…

Analysis of PDEs · Mathematics 2024-02-26 J. L. Boldrini , B. Climent-Ezquerra , M. A. Rojas-Medar , M. D. Rojas-Medar

Many aquatic microorganisms are able to swim. In natural environments they typically do so in the presence of flows. In recent years it has been shown that the interplay of swimming and flows can give rise to interesting and biologically…

Fluid Dynamics · Physics 2022-07-20 M. Borgnino , G. Boffetta , M. Cencini , F. De Lillo , K. Gustavsson

Organisms often swim through density stratified fluids. In this Letter, we investigate the dynamics of small active particles swimming in density gradients and report theoretical evidence of taxis as a result of density stratification…

Soft Condensed Matter · Physics 2023-08-02 Vaseem A. Shaik , Gwynn J. Elfring

Apparent biodiversity on earth exists only if we compare different species separated from their environments. Meanwhile coexisting species have to be identical in terms of energetic interactions. Consider the biosphere as a network of…

Populations and Evolution · Quantitative Biology 2007-05-23 D. Balciunas

Dynamical tide consists of various waves that can resonate with orbital motion. We test this coupling of dynamical tide and orbital motion using a simple two-dimensional shallow water model, which can be applied to a rocky planet covered…

Earth and Planetary Astrophysics · Physics 2025-02-04 Xing Wei

Many fascinating properties of biological active matter crucially depend on the capacity of constituting entities to perform directed motion, e.g., molecular motors transporting vesicles inside cells or bacteria searching for food. While…

Statistical Mechanics · Physics 2023-06-21 Pietro Luigi Muzzeddu , Édgar Roldán , Andrea Gambassi , Abhinav Sharma

Undulatory locomotion of microorganisms like soil-dwelling worms and spermatozoa, in structured environments, is ubiquitous in nature. They navigate complex environments consisting of fluids and obstacles, negotiating hydrodynamic effects…

Fluid Dynamics · Physics 2010-10-20 Trushant S. Majmudar , Eric Keaveny , Mike Shelley , Jun Zhang

The present study investigates how global thermodynamic properties of the climate system are affected by the changes in the intensity of the imposed oceanic heat transport in an atmospheric general circulation model in aqua-planet…

Atmospheric and Oceanic Physics · Physics 2014-10-13 Alexander Schröder , Valerio Lucarini , Frank Lunkeit

In this paper, we wish to investigate the dynamics of information transfer in evolutionary dynamics. We use information theoretic tools to track how much information an evolving population has obtained and managed to retain about different…

Populations and Evolution · Quantitative Biology 2021-04-09 Nicholas Guttenberg

Marine microorganisms often reach high swimming speeds, either to take advantage of evanescent nutrient patches or to beat Brownian forces. Since this implies that a sizable part of their energetic budget must be allocated to motion, it is…

Biological Physics · Physics 2015-06-16 Mario E. Di Salvo , C. A. Condat