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Despite their topological complexity almost all functional properties of metabolic networks can be derived from steady-state dynamics. Indeed, many theoretical investigations (like flux-balance analysis) rely on extracting function from…

Molecular Networks · Quantitative Biology 2009-11-13 Carsten Marr , Mark Mueller-Linow , Marc-Thorsten Huett

Percolation establishes the connectivity of complex networks and is one of the most fundamental critical phenomena for the study of complex systems. On simple networks, percolation displays a second-order phase transition; on multiplex…

Adaptation and Self-Organizing Systems · Physics 2023-03-14 Hanlin Sun , Filippo Radicchi , Jürgen Kurths , Ginestra Bianconi

We investigate the evolutionary dynamics in directed and/or weighted networks. We study the fixation probability of a mutant in finite populations in stochastic voter-type dynamics for several update rules. The fixation probability is…

Physics and Society · Physics 2009-03-12 Naoki Masuda , Hisashi Ohtsuki

We study the nonequilibrium properties of directed Ising models with non conserved dynamics, in which each spin is influenced by only a subset of its nearest neighbours. We treat the following models: (i) the one-dimensional chain; (ii) the…

Statistical Mechanics · Physics 2015-05-14 Claude Godreche , Alan J. Bray

The modeling of diffusion processes on graphs is the basis for many network science and machine learning approaches. Entropic measures of network-based diffusion have recently been employed to investigate the reversibility of these…

Dynamical Systems · Mathematics 2025-10-23 Samuel Koovely , Alexandre Bovet

Many complex systems can be described in terms of networks of interacting units. Recent studies have shown that a wide class of both natural and artificial nets display a surprisingly widespread feature: the presence of highly heterogeneous…

Disordered Systems and Neural Networks · Physics 2007-05-23 R. Ferrer i Cancho , R. V. Sole

We present derivations of the contagion condition for a range of spreading mechanisms on families of generalized random networks and bipartite random networks. We show how the contagion condition can be broken into three elements, two…

Physics and Society · Physics 2017-09-01 Peter Sheridan Dodds

Dynamical reaction-diffusion processes and meta-population models are standard modeling approaches for a wide variety of phenomena in which local quantities - such as density, potential and particles - diffuse and interact according to the…

Statistical Mechanics · Physics 2007-05-23 V. Colizza , R. Pastor-Satorras , A. Vespignani

Mixture transition distribution time series models build high-order dependence through a weighted combination of first-order transition densities for each one of a specified number of lags. We present a framework to construct stationary…

Methodology · Statistics 2025-02-25 Xiaotian Zheng , Athanasios Kottas , Bruno Sansó

In studying network growth, the conventional approach is to devise a growth mechanism, quantify the evolution of a statistic or distribution (such as the degree distribution), and then solve the equations in the steady state (the…

Physics and Society · Physics 2014-11-05 Babak Fotouhi

In this paper we study networks of nodes characterised by binary traits that change both endogenously and through nearest-neighbour interaction. Our analytical results show that those traits can be ranked according to the noisiness of their…

Systems of dynamical interactions between competing species can be used to model many complex systems, and can be mathematically described by {\em random} networks. Understanding how patterns of activity arise in such systems is important…

Adaptation and Self-Organizing Systems · Physics 2016-01-21 Nick McCullen , Thomas Wagenknecht

Models of dynamic networks --- networks that evolve over time --- have manifold applications. We develop a discrete-time generative model for social network evolution that inherits the richness and flexibility of the class of…

Methodology · Statistics 2015-03-24 Pavel N. Krivitsky , Mark S. Handcock

Population structure has been known to substantially affect evolutionary dynamics. Networks that promote the spreading of fitter mutants are called amplifiers of natural selection, and those that suppress the spreading of fitter mutants are…

Physics and Society · Physics 2023-10-26 Jnanajyoti Bhaumik , Naoki Masuda

We study a network model that couples the dynamics of link states with the evolution of the network topology. The state of each link, either A or B, is updated according to the majority rule or zero-temperature Glauber dynamics, in which…

Physics and Society · Physics 2014-06-17 Adrián Carro , Federico Vazquez , Raúl Toral , Maxi San Miguel

Rapidly mutating pathogens may be able to persist in the population and reach an endemic equilibrium by escaping hosts' acquired immunity. For such diseases, multiple biological, environmental and population-level mechanisms determine the…

Physics and Society · Physics 2019-02-07 Alberto Aleta , Andreia N. S. Hisi , Sandro Meloni , Chiara Poletto , Vittoria Colizza , Yamir Moreno

A class of discrete distributions can be derived from stationary renewal processes. They have the useful property that the mean is a simple function of the model parameters. Thus regressions of the distribution mean on covariates can be…

Methodology · Statistics 2018-03-01 Rose Baker

Models of strategy evolution on static networks help us understand how population structure can promote the spread of traits like cooperation. One key mechanism is the formation of altruistic spatial clusters, where neighbors of a…

Physics and Society · Physics 2023-09-07 Qi Su , Alex McAvoy , Joshua B. Plotkin

Adaptive networks have been recently introduced in the context of disease propagation on complex networks. They account for the mutual interaction between the network topology and the states of the nodes. Until now, existing models have…

Statistical Mechanics · Physics 2010-09-28 Vincent Marceau , Pierre-André Noël , Laurent Hébert-Dufresne , Antoine Allard , Louis J. Dubé

We analyze random networks that change over time. First we analyze a dynamic Erdos-Renyi model, whose edges change over time. We describe its stationary distribution, its convergence thereto, and the SI contact process on the network, which…

Probability · Mathematics 2015-03-19 Benjamin Armbruster , John Gunnar Carlsson