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Embedding models for deterministic Knowledge Graphs (KG) have been extensively studied, with the purpose of capturing latent semantic relations between entities and incorporating the structured knowledge into machine learning. However,…

Artificial Intelligence · Computer Science 2019-12-24 Xuelu Chen , Muhao Chen , Weijia Shi , Yizhou Sun , Carlo Zaniolo

Predicting medications is a crucial task in many intelligent healthcare systems. It can assist doctors in making informed medication decisions for patients according to electronic medical records (EMRs). However, medication prediction is a…

Artificial Intelligence · Computer Science 2022-05-02 Yang An , Bo Jin , Xiaopeng Wei

We introduce a novel embedding model, named NoGE, which aims to integrate co-occurrence among entities and relations into graph neural networks to improve knowledge graph completion (i.e., link prediction). Given a knowledge graph, NoGE…

Computation and Language · Computer Science 2021-12-28 Dai Quoc Nguyen , Vinh Tong , Dinh Phung , Dat Quoc Nguyen

Adoption of recently developed methods from machine learning has given rise to creation of drug-discovery knowledge graphs (KG) that utilize the interconnected nature of the domain. Graph-based modelling of the data, combined with KG…

Machine Learning · Computer Science 2022-07-27 Stephen Bonner , Ufuk Kirik , Ola Engkvist , Jian Tang , Ian P Barrett

Knowledge graph (KG) embedding has been used to benefit the diagnosis of animal diseases by analyzing electronic medical records (EMRs), such as notes and veterinary records. However, learning representations to capture entities and…

Artificial Intelligence · Computer Science 2023-09-08 Van Thuy Hoang , Sang Thanh Nguyen , Sangmyeong Lee , Jooho Lee , Luong Vuong Nguyen , O-Joun Lee

In clinical treatment, identifying potential adverse reactions of drugs can help assist doctors in making medication decisions. In response to the problems in previous studies that features are high-dimensional and sparse, independent…

Quantitative Methods · Quantitative Biology 2024-07-30 Yufeng Li , Wenchao Zhao , Bo Dang , Xu Yan , Weimin Wang , Min Gao , Mingxuan Xiao

A Knowledge Graph (KG) is the directed graphical representation of entities and relations in the real world. KG can be applied in diverse Natural Language Processing (NLP) tasks where knowledge is required. The need to scale up and complete…

Computation and Language · Computer Science 2024-04-19 Xincan Feng , Zhi Qu , Yuchang Cheng , Taro Watanabe , Nobuhiro Yugami

Knowledge graph embedding plays an important role in knowledge representation, reasoning, and data mining applications. However, for multiple cross-domain knowledge graphs, state-of-the-art embedding models cannot make full use of the data…

Machine Learning · Computer Science 2021-08-17 Hao Peng , Haoran Li , Yangqiu Song , Vincent Zheng , Jianxin Li

Knowledge Graphs (KG) constitute a flexible representation of complex relationships between entities particularly useful for biomedical data. These KG, however, are very sparse with many missing edges (facts) and the visualisation of the…

Artificial Intelligence · Computer Science 2016-12-08 Armando Vieira

Knowledge Graph (KG) is a flexible structure that is able to describe the complex relationship between data entities. Currently, most KG embedding models are trained based on negative sampling, i.e., the model aims to maximize some…

Artificial Intelligence · Computer Science 2021-06-17 Zelong Li , Jianchao Ji , Zuohui Fu , Yingqiang Ge , Shuyuan Xu , Chong Chen , Yongfeng Zhang

Knowledge graph embedding (KGE) methods have achieved great success in handling various knowledge graph (KG) downstream tasks. However, KGE methods may learn biased representations on low-quality KGs that are prevalent in the real world.…

Machine Learning · Computer Science 2024-05-21 Tianzhe Zhao , Jiaoyan Chen , Yanchi Ru , Qika Lin , Yuxia Geng , Jun Liu

Knowledge Graph Representation Learning (KGRL), or Knowledge Graph Embedding (KGE), is essential for AI applications such as knowledge construction and information retrieval. These models encode entities and relations into lower-dimensional…

Artificial Intelligence · Computer Science 2024-10-22 Tiroshan Madushanka , Ryutaro Ichise

Knowledge graphs are freely aggregated, published, and edited in the Web of data, and thus may overlap. Hence, a key task resides in aligning (or matching) their content. This task encompasses the identification, within an aggregated…

Machine Learning · Computer Science 2021-10-22 Pierre Monnin , Chedy Raïssi , Amedeo Napoli , Adrien Coulet

The goal of representation learning of knowledge graph is to encode both entities and relations into a low-dimensional embedding spaces. Many recent works have demonstrated the benefits of knowledge graph embedding on knowledge graph…

Artificial Intelligence · Computer Science 2019-10-11 Wenqiang Liu , Hongyun Cai , Xu Cheng , Sifa Xie , Yipeng Yu , Hanyu Zhang

Knowledge graphs (KGs) often contain various errors. Previous works on detecting errors in KGs mainly rely on triplet embedding from graph structure. We conduct an empirical study and find that these works struggle to discriminate noise…

Computation and Language · Computer Science 2024-01-17 Xiangyu Liu , Yang Liu , Wei Hu

Continual Knowledge Graph Embedding (CKGE) aims to continually learn embeddings for new knowledge, i.e., entities and relations, while retaining previously acquired knowledge. Most existing CKGE methods mitigate catastrophic forgetting via…

Information Retrieval · Computer Science 2026-04-21 Jing Qi , Yuxiang Wang , Zhiyuan Yu , Xiaoliang Xu , Yuanshi Zheng , Tianxing Wu

The paper utilizes the graph embeddings generated for entities of a large biomedical database to perform link prediction to capture various new relationships among different entities. A novel node similarity measure is proposed that…

Information Retrieval · Computer Science 2021-11-01 Prakhar Gurawa , Matthias Nickles

Knowledge Graphs (KG) and associated Knowledge Graph Embedding (KGE) models have recently begun to be explored in the context of drug discovery and have the potential to assist in key challenges such as target identification. In the drug…

Biomolecules · Quantitative Biology 2022-06-01 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Charles Tapley Hoyt , William L Hamilton

Designing a new clinical trial entails many decisions, such as defining a cohort and setting the study objectives to name a few, and therefore can benefit from recommendations based on exhaustive mining of past clinical trial records. Here,…

Artificial Intelligence · Computer Science 2023-09-29 Murthy V. Devarakonda , Smita Mohanty , Raja Rao Sunkishala , Nag Mallampalli , Xiong Liu

The goal of Knowledge Tracing (KT) is to estimate how well students have mastered a concept based on their historical learning of related exercises. The benefit of knowledge tracing is that students' learning plans can be better organised…

Machine Learning · Computer Science 2022-01-25 Xiangyu Song , Jianxin Li , Qi Lei , Wei Zhao , Yunliang Chen , Ajmal Mian