Related papers: Sparse Suffix and LCP Array: Simple, Direct, Small…

Pattern matching is a fundamental process in almost every scientific domain. The problem involves finding the positions of a given pattern (usually of short length) in a reference stream of data (usually of large length). The matching can…

Recently, Cenzato et al.\ proposed a new text index, called the \emph{suffixient array}, which is a subset of the suffix array and supports locating a single pattern occurrence or finding its maximal exact matches (MEMs), assuming random…

We consider sparse variants of the classical Learning Parities with random Noise (LPN) problem. Our main contribution is a new algorithmic framework that provides learning algorithms against low-noise for both Learning Sparse Parities…

We give the first concise description of the fastest known suffix sorting algorithm in main memory, the DivSufSort by Yuta Mori. We then present an extension that also computes the LCP-array, which is competitive with the fastest known…

It is well known that sparse approximation problem is \textsf{NP}-hard under general dictionaries. Several algorithms have been devised and analyzed in the past decade under various assumptions on the \emph{coherence} $\mu$ of the…

In this work, we develop a fast hierarchical solver for solving large, sparse least squares problems. We build upon the algorithm, spaQR (sparsified QR), that was developed by the authors to solve large sparse linear systems. Our algorithm…

We develop the theory and practical implementation of p-adic sparse coding of data. Rather than the standard, sparsifying criterion that uses the $L_0$ pseudo-norm, we use the p-adic norm. We require that the hierarchy or tree be…

We introduce a new metric of match, called Cartesian tree matching, which means that two strings match if they have the same Cartesian trees. Based on Cartesian tree matching, we define single pattern matching for a text of length n and a…

Sparse coding--that is, modelling data vectors as sparse linear combinations of basis elements--is widely used in machine learning, neuroscience, signal processing, and statistics. This paper focuses on the large-scale matrix factorization…

Given a CNF formula F on n variables, the problem of model counting or #SAT is to compute the number of satisfying assignments of F . Model counting is a fundamental but hard problem in computer science with varied applications. Recent…

Longest common extension queries (LCE queries) and runs are ubiquitous in algorithmic stringology. Linear-time algorithms computing runs and preprocessing for constant-time LCE queries have been known for over a decade. However, these…

We propose a novel algorithm for efficiently computing a sparse directed adjacency matrix from a group of time series following a causal graph process. Our solution is scalable for both dense and sparse graphs and automatically selects the…

Sparse linear regression (SLR) is a well-studied problem in statistics where one is given a design matrix $X\in\mathbb{R}^{m\times n}$ and a response vector $y=X\theta^*+w$ for a $k$-sparse vector $\theta^*$ (that is, $\|\theta^*\|_0\leq…

We present a new, simple, and efficient approach for computing the Lempel-Ziv (LZ77) factorization of a string in linear time, based on suffix arrays. Computational experiments on various data sets show that our approach constantly…

In high dimensional regression, feature clustering by their effects on outcomes is often as important as feature selection. For that purpose, clustered Lasso and octagonal shrinkage and clustering algorithm for regression (OSCAR) are used…

In this work, we develop a new fast algorithm, spaQR -- sparsified QR, for solving large, sparse linear systems. The key to our approach is using low-rank approximations to sparsify the separators in a Nested Dissection based Householder QR…

We explore algorithms and limitations for sparse optimization problems such as sparse linear regression and robust linear regression. The goal of the sparse linear regression problem is to identify a small number of key features, while the…

The well-known dictionary-based algorithms of the Lempel-Ziv (LZ) 77 family are the basis of several universal lossless compression techniques. These algorithms are asymmetric regarding encoding/decoding time and memory requirements, with…

We multiply two $n \times n$ matrices $S,T$ over semirings in the Congested Clique model, where $n$ fully connected nodes communicate synchronously using $O(\log n)$-bit messages, within $O(nz(S)^{1/3} nz(T)^{1/3}/n + 1)$ rounds of…

Sparse decision trees are one of the most common forms of interpretable models. While recent advances have produced algorithms that fully optimize sparse decision trees for prediction, that work does not address policy design, because the…