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Annotation is a major hurdle in the semantic segmentation of microscopy images and volumes due to its prerequisite expertise and effort. This work enables the training of semantic segmentation networks on images with only a single point for…

Computer Vision and Pattern Recognition · Computer Science 2021-03-22 Shijie Li , Neel Dey , Katharina Bermond , Leon von der Emde , Christine A. Curcio , Thomas Ach , Guido Gerig

Despite the recent progress in medical image segmentation with scribble-based annotations, the segmentation results of most models are still not ro-bust and generalizable enough in open environments. Evidential deep learn-ing (EDL) has…

Computer Vision and Pattern Recognition · Computer Science 2024-05-24 Yitong Yang , Xinli Xu , Haigen Hu , Haixia Long , Qianwei Zhou , Qiu Guan

We propose a straightforward yet highly effective few-shot fine-tuning strategy for adapting the Segment Anything (SAM) to anatomical segmentation tasks in medical images. Our novel approach revolves around reformulating the mask decoder…

Computer Vision and Pattern Recognition · Computer Science 2024-07-08 Weiyi Xie , Nathalie Willems , Shubham Patil , Yang Li , Mayank Kumar

Noisy labels can significantly affect the performance of deep neural networks (DNNs). In medical image segmentation tasks, annotations are error-prone due to the high demand in annotation time and in the annotators' expertise. Existing…

Image and Video Processing · Electrical Eng. & Systems 2023-08-08 Jiachen Yao , Yikai Zhang , Songzhu Zheng , Mayank Goswami , Prateek Prasanna , Chao Chen

The recent state-of-the-art deep learning methods have significantly improved brain tumor segmentation. However, fully supervised training requires a large amount of manually labeled masks, which is highly time-consuming and needs domain…

Image and Video Processing · Electrical Eng. & Systems 2019-11-07 Zhanghexuan Ji , Yan Shen , Chunwei Ma , Mingchen Gao

Convolutional neural networks (CNNs) have achieved state-of-the-art performance for automatic medical image segmentation. However, they have not demonstrated sufficiently accurate and robust results for clinical use. In addition, they are…

Computer Vision and Pattern Recognition · Computer Science 2018-07-23 Guotai Wang , Wenqi Li , Maria A. Zuluaga , Rosalind Pratt , Premal A. Patel , Michael Aertsen , Tom Doel , Anna L. David , Jan Deprest , Sebastien Ourselin , Tom Vercauteren

A large portion of volumetric medical data, especially magnetic resonance imaging (MRI) data, is anisotropic, as the through-plane resolution is typically much lower than the in-plane resolution. Both 3D and purely 2D deep learning-based…

Image and Video Processing · Electrical Eng. & Systems 2023-11-29 Alex Ling Yu Hung , Haoxin Zheng , Kai Zhao , Xiaoxi Du , Kaifeng Pang , Qi Miao , Steven S. Raman , Demetri Terzopoulos , Kyunghyun Sung

The medical imaging literature has witnessed remarkable progress in high-performing segmentation models based on convolutional neural networks. Despite the new performance highs, the recent advanced segmentation models still require large,…

Image and Video Processing · Electrical Eng. & Systems 2020-02-13 Nima Tajbakhsh , Laura Jeyaseelan , Qian Li , Jeffrey Chiang , Zhihao Wu , Xiaowei Ding

Modern medical image segmentation methods primarily use discrete representations in the form of rasterized masks to learn features and generate predictions. Although effective, this paradigm is spatially inflexible, scales poorly to…

Computer Vision and Pattern Recognition · Computer Science 2024-03-22 Yejia Zhang , Pengfei Gu , Nishchal Sapkota , Danny Z. Chen

In medical imaging analysis, deep learning has shown promising results. We frequently rely on volumetric data to segment medical images, necessitating the use of 3D architectures, which are commended for their capacity to capture interslice…

Image and Video Processing · Electrical Eng. & Systems 2023-05-18 Ikboljon Sobirov , Numan Saeed , Mohammad Yaqub

Accurate segmentation of tissues and instruments in surgical scenes is annotation-intensive due to irregular shapes, thin structures, specularities, and frequent occlusions. While SAM models support point, box, and mask prompts, points are…

Image and Video Processing · Electrical Eng. & Systems 2026-03-20 Haonan Ping , Jian Jiang , Cheng Yuan , Qizhen Sun , Lv Wu , Yutong Ban

Precise image segmentation provides clinical study with instructive information. Despite the remarkable progress achieved in medical image segmentation, there is still an absence of a 3D foundation segmentation model that can segment a wide…

Computer Vision and Pattern Recognition · Computer Science 2025-02-13 Yuxin Du , Fan Bai , Tiejun Huang , Bo Zhao

Volumetric medical segmentation is a critical component of 3D medical image analysis that delineates different semantic regions. Deep neural networks have significantly improved volumetric medical segmentation, but they generally require…

Image and Video Processing · Electrical Eng. & Systems 2024-07-18 Hanan Gani , Muzammal Naseer , Fahad Khan , Salman Khan

We propose an attention mechanism for 3D medical image segmentation. The method, named segmentation-by-detection, is a cascade of a detection module followed by a segmentation module. The detection module enables a region of interest to…

Computer Vision and Pattern Recognition · Computer Science 2017-11-02 Min Tang , Zichen Zhang , Dana Cobzas , Martin Jagersand , Jacob L. Jaremko

Although deep neural networks have been a dominant method for many 2D vision tasks, it is still challenging to apply them to 3D tasks, such as medical image segmentation, due to the limited amount of annotated 3D data and limited…

Computer Vision and Pattern Recognition · Computer Science 2020-11-02 Yingwei Li , Zhuotun Zhu , Yuyin Zhou , Yingda Xia , Wei Shen , Elliot K. Fishman , Alan L. Yuille

Weakly supervised LiDAR semantic segmentation has made significant strides with limited labeled data. However, most existing methods focus on the network training under weak supervision, while efficient annotation strategies remain largely…

Computer Vision and Pattern Recognition · Computer Science 2024-08-13 Yilong Chen , Zongyi Xu , xiaoshui Huang , Ruicheng Zhang , Xinqi Jiang , Xinbo Gao

Medical image segmentation is almost the most important pre-processing procedure in computer-aided diagnosis but is also a very challenging task due to the complex shapes of segments and various artifacts caused by medical imaging, (i.e.,…

Image and Video Processing · Electrical Eng. & Systems 2023-04-26 Hao Du , Qihua Dong , Yan Xu , Jing Liao

Since the advent of U-Net, fully convolutional deep neural networks and its many variants have completely changed the modern landscape of deep learning based medical image segmentation. However, the over dependence of these methods on pixel…

Image and Video Processing · Electrical Eng. & Systems 2021-01-20 Simon Bohlender , Ilkay Oksuz , Anirban Mukhopadhyay

Segmentation of tumors in brain MRI images is a challenging task, where most recent methods demand large volumes of data with pixel-level annotations, which are generally costly to obtain. In contrast, image-level annotations, where only…

Image and Video Processing · Electrical Eng. & Systems 2019-11-07 Sergey Pavlov , Alexey Artemov , Maksim Sharaev , Alexander Bernstein , Evgeny Burnaev

Image segmentation remains a pivotal component in medical image analysis, aiding in the extraction of critical information for precise diagnostic practices. With the advent of deep learning, automated image segmentation methods have risen…

Image and Video Processing · Electrical Eng. & Systems 2024-03-07 Nhat-Tan Bui , Dinh-Hieu Hoang , Minh-Triet Tran , Gianfranco Doretto , Donald Adjeroh , Brijesh Patel , Arabinda Choudhary , Ngan Le