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In imaging inverse problems, we would like to know how close the recovered image is to the true image in terms of full-reference image quality (FRIQ) metrics like PSNR, SSIM, LPIPS, etc. This is especially important in safety-critical…

Computer Vision and Pattern Recognition · Computer Science 2025-05-15 Jeffrey Wen , Rizwan Ahmad , Philip Schniter

We present mrfmsim, an open-source Python package that facilitates the design, simulation, and analysis of magnetic resonance force microscopy (MRFM) experiments. MRFM is a scanning-probe technique that detects magnetic resonance from…

Computational Physics · Physics 2026-03-03 Peter Sun , Corinne E. Isaac , Michael C. Boucher , Eric W. Moore , Zhen Wang , John A. Marohn

Spike-based encoders represent information as sequences of spikes or pulses, which are transmitted between neurons. A prevailing consensus suggests that spike-based approaches demonstrate exceptional capabilities in capturing the temporal…

Signal Processing · Electrical Eng. & Systems 2025-06-03 MHD Anas Alsakkal , Runze Wang , Jayawan Wijekoon , Huajin Tang

Magnetic resonance imaging (MRI) is indispensable for diagnosing and planning treatment in various medical conditions due to its ability to produce multi-series images that reveal different tissue characteristics. However, integrating these…

Image and Video Processing · Electrical Eng. & Systems 2024-12-11 Churan Wang , Fei Gao , Lijun Yan , Siwen Wang , Yizhou Yu , Yizhou Wang

We present Clinica (www.clinica.run), an open-source software platform designed to make clinical neuroscience studies easier and more reproducible. Clinica aims for researchers to i) spend less time on data management and processing, ii)…

The discovery of the theory of compressed sensing brought the realisation that many inverse problems can be solved even when measurements are "incomplete". This is particularly interesting in magnetic resonance imaging (MRI), where long…

Dispersion scan is a self-referenced measurement technique for ultrashort pulses. Similar to frequency-resolved optical gating, the dispersion scan technique records the dependence of nonlinearly generated spectra as a function of a…

Instrumentation and Detectors · Physics 2018-02-14 Esmerando Escoto , Tamas Nagy , Ayhan Tajalli , Günter Steinmeyer

Quantum Hamiltonian simulation, which simulates the evolution of quantum systems and probes quantum phenomena, is one of the most promising applications of quantum computing. Recent experimental results suggest that Hamiltonian-oriented…

Programming Languages · Computer Science 2023-11-21 Yuxiang Peng , Jacob Young , Pengyu Liu , Xiaodi Wu

Cardiac MRI is limited by long acquisition times, which can lead to patient discomfort and motion artifacts. We aim to accelerate Cartesian dynamic cardiac MRI by learning efficient, scan-adaptive undersampling patterns that preserve…

Image and Video Processing · Electrical Eng. & Systems 2026-02-24 Siddhant Gautam , Angqi Li , Prachi P. Agarwal , Anil K. Attili , Jeffrey A. Fessler , Nicole Seiberlich , Saiprasad Ravishankar

Accurate and reproducible brain morphometry from structural MRI is critical for monitoring neuroanatomical changes across time and across imaging domains. Although deep learning has accelerated segmentation workflows, scanner-induced…

Computer Vision and Pattern Recognition · Computer Science 2025-04-23 Ekaterina Kondrateva , Sandzhi Barg , Mikhail Vasiliev

Processing of medical images such as MRI or CT presents unique challenges compared to RGB images typically used in computer vision. These include a lack of labels for large datasets, high computational costs, and metadata to describe the…

Image and Video Processing · Electrical Eng. & Systems 2021-08-06 Fernando Pérez-García , Rachel Sparks , Sébastien Ourselin

Magnetic Resonance Imaging (MRI) is one of the most dynamic and safe imaging techniques available for clinical applications. However, the rather slow speed of MRI acquisitions limits the patient throughput and potential indi cations.…

Computer Vision and Pattern Recognition · Computer Science 2018-11-14 Risheng Liu , Yuxi Zhang , Shichao Cheng , Xin Fan , Zhongxuan Luo

Purpose: The clinical feasibility and translation of many advanced quantitative MRI (qMRI) techniques are inhibited by their restriction to 'research mode', due to resource-intensive, offline parameter estimation. This work aimed to achieve…

The paper introduces a framework for the recoverability analysis in compressive sensing for imaging applications such as CI cameras, rapid MRI and coded apertures. This is done using the fact that the Spherical Section Property (SSP) of a…

Information Theory · Computer Science 2012-12-07 Mahdi S. Hosseini , Konstantinos N. Plataniotis

Purpose: To accelerate MRI acquisition by incorporating the previous scans of a subject during reconstruction. Although longitudinal imaging constitutes much of clinical MRI, leveraging previous scans is challenging due to the complex…

Image and Video Processing · Electrical Eng. & Systems 2025-10-21 Yonatan Urman , Zachary Shah , Ashwin Kumar , Bruno P. Soares , Kawin Setsompop

The parallel simulation of Spiking Neural P systems is mainly based on a matrix representation, where the graph inherent to the neural model is encoded in an adjacency matrix. The simulation algorithm is based on a matrix-vector…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-09 Javier Hernández-Tello , Miguel Ángel Martínez-del-Amor , David Orellana-Martín , Francis George C. Cabarle

Echocardiography is an essential medical technique for diagnosing cardiovascular diseases, but its high operational complexity has led to a shortage of trained professionals. To address this issue, we introduce a novel probe movement…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Haojun Jiang , Teng Wang , Zhenguo Sun , Yulin Wang , Yang Yue , Yu Sun , Ning Jia , Meng Li , Shaqi Luo , Shiji Song , Gao Huang

Code comprehension has been recently investigated from physiological and cognitive perspectives through the use of medical imaging. Floyd et al (i.e., the original study) used fMRI to classify the type of comprehension tasks performed by…

Software Engineering · Computer Science 2019-04-04 Davide Fucci , Daniela Girardi , Nicole Novielli , Luigi Quaranta , Filippo Lanubile

In this paper, we propose the use of Recurrent Inference Machines (RIMs) to perform T1 and T2 mapping. The RIM is a neural network framework that learns an iterative inference process based on the signal model, similar to conventional…

Image and Video Processing · Electrical Eng. & Systems 2021-06-15 E. R. Sabidussi , S. Klein , M. W. A. Caan , S. Bazrafkan , A. J. den Dekker , J. Sijbers , W. J. Niessen , D. H. J. Poot

Purpose: The aim of this work is to develop a high-performance, flexible and easy-to-use MRI reconstruction framework using the scientific programming language Julia. Methods: Julia is a modern, general purpose programming language with…

Medical Physics · Physics 2021-03-22 Tobias Knopp , Mirco Grosser