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In this research, we explore how permanent charges affect the movement of ionic currents through ion channels. We use a quasi-one-dimensional classical Poisson-Nernst-Planck (PNP) model to study two types of ions, one positively charged and…

Dynamical Systems · Mathematics 2023-12-29 Hamid Mofidi

We present a novel class of high-order space-time finite element schemes for the Poisson-Nernst-Planck (PNP) equations. We prove that our schemes are mass conservative, positivity preserving, and unconditionally energy stable for any order…

Numerical Analysis · Mathematics 2022-05-25 Guosheng Fu , Zhiliang Xu

Ion flow in charged nanopores is strongly influenced by the ratio of the Debye length to the pore radius. We investigate the asymptotic behaviour of solutions to the Poisson-Nernst-Planck (PNP) system in narrow pore like geometries and…

Analysis of PDEs · Mathematics 2019-04-10 B. Matejczyk , J. -F. Pietschmann , G. Richardson , M. -T. Wolfram

In this paper, we present an efficient numerical method to address a thermodynamically consistent gas flow model in porous media involving compressible gas and deformable rock. The accurate modeling of gas flow in porous media often poses…

Numerical Analysis · Mathematics 2026-02-16 Huangxin Chen , Yuxiang Chen , Jisheng Kou , Shuyu Sun

In this article we develop an algorithm for the efficient simulation of electrolytes in the presence of physical boundaries. In previous work the Discrete Ion Stochastic Continuum Overdamped Solvent (DISCOS) algorithm was derived for triply…

Uncompensated charges do not occur in Nature and any local charge should be a result of charge separation. Dissociable chemical groups at interfaces in contact with ions in solution, whose chemical equilibrium depends both on short-range…

Soft Condensed Matter · Physics 2019-02-21 Yael Avni , David Andelman , Rudolf Podgornik

Through an exact method we numerically solve the time evolution of the density profile for an initially localized state in the one-dimensional bosons with repulsive short-range interactions. We show that a localized state with a density…

Quantum Gases · Physics 2013-05-30 Jun Sato , Rina Kanamoto , Eriko Kaminishi , Tetsuo Deguchi

We study a Newtonian model which allows us to describe some extremely flat objects in galactic dynamics. This model is described by a partial differential equation system called Vlasov-Poisson, whose solutions describe the temporal…

Analysis of PDEs · Mathematics 2023-10-17 Matias Moreno

We propose a new rest shape optimization framework to achieve sag-free simulations of discrete elastic rods. To optimize rest shape parameters, we formulate a minimization problem based on the kinetic energy with a regularizer while…

Graphics · Computer Science 2025-02-18 Tetsuya Takahashi , Christopher Batty

The Poisson-Nernst-Planck (PNP) system is a standard model for describing ion transport. In many applications, e.g., ions in biological tissues, the presence of thin boundary layers poses both modelling and computational challenges. In a…

Biological Physics · Physics 2018-06-22 Zilong Song , Xiulei Cao , Huaxiong Huang

For the structure of the thin electrical double layer~(EDL) and the property related to the EDL capacitance, we analyze boundary layer solutions (corresponding to the electrostatic potential) of a non-local elliptic equation which is a…

Analysis of PDEs · Mathematics 2018-07-31 Chiun-Chang Lee

We present an integrated experimental and quantitative theoretical study of the mechanics of self-crosslinked, neutral, repulsive pNIPAM microgel suspensions over concentration (c) range spanning the fluid, glassy and putative "soft jammed"…

Soft Condensed Matter · Physics 2018-10-01 Ashesh Ghosh , Gaurav Chaudhary , Jin Gu Kang , Paul V. Braun , Randy H. Ewoldt , Kenneth S. Schweizer

We study closed dense collections of hard spheres that collide inelastically with constant coefficient of normal restitution. We find inhomogeneous states (IS) where the density profile is spatially non-uniform but constant in time. The…

Chaotic Dynamics · Physics 2014-02-19 Itzhak Fouxon

Small-scale plasticity problems are often characterised by different patterning behaviours ranging from macroscopic down to the atomistic scale. In successful models of such complex behaviour, its origin lies within non-convexity of the…

Computational Physics · Physics 2018-11-01 F. Bormann , R. H. J. Peerlings , M. G. D. Geers

A numerically stable method to solve the discretized Boltzmann-Enskog equation describing the behavior of non ideal fluids under inhomogeneous conditions is presented. The algorithm employed uses a Lagrangian finite-difference scheme for…

Mesoscale and Nanoscale Physics · Physics 2015-06-04 Simone Melchionna , Umberto Marini Bettolo Marconi

We present a methodology that extends invariant manifold theory to a class of autonomous piecewise linear systems with nonsmoothness at the equilibrium, providing a framework for model order reduction in mechanical structures with compliant…

Dynamical Systems · Mathematics 2026-01-16 A. Yassine Karoui , Remco I. Leine

A robust $hp$-adaptive finite element framework is presented for the investigation of static cracks in materials characterized by complex, pointwise density variations. Within such heterogeneous media, the equilibrium equation governed by…

Numerical Analysis · Mathematics 2025-12-29 S. M. Mallikarjunaiah

We present a new high-order accurate computational fluid dynamics model based on the incompressible Navier-Stokes equations with a free surface for the accurate simulation of nonlinear and dispersive water waves in the time domain. The…

Numerical Analysis · Mathematics 2024-06-06 Anders Melander , Max E. Bitsch , Dong Chen , Allan P. Engsig-Karup

The main concern of this paper is to mathematically investigate the formation of a plasma sheath near the surface of nonplanar walls. We study the existence and asymptotic stability of stationary solutions for the nonisentropic…

Analysis of PDEs · Mathematics 2024-03-13 Mingjie Li , Masahiro Suzuki

This paper proposes a computational framework for the design optimization of stable structures under large deformations by incorporating nonlinear buckling constraints. A novel strategy for suppressing spurious buckling modes related to…

Computational Engineering, Finance, and Science · Computer Science 2023-06-07 Guodong Zhang , Kapil Khandelwal , Tong Guo